diff --git a/hack/runtime-migrator/go.mod b/hack/runtime-migrator/go.mod
new file mode 100644
index 00000000..b14d7ecd
--- /dev/null
+++ b/hack/runtime-migrator/go.mod
@@ -0,0 +1,62 @@
+module github.com/kyma-project/infrastructure-manager/hack/runtime-migrator-app
+
+go 1.23.1
+
+require (
+	github.com/gardener/gardener v1.100.0
+	github.com/kyma-project/infrastructure-manager v0.0.0-20241010165136-c9d296aadebd
+	github.com/kyma-project/infrastructure-manager/hack/shoot-comparator v0.0.0-20241010165136-c9d296aadebd
+	github.com/pkg/errors v0.9.1
+	k8s.io/api v0.31.1
+	k8s.io/apimachinery v0.31.1
+	k8s.io/client-go v0.31.1
+	sigs.k8s.io/controller-runtime v0.19.0
+	sigs.k8s.io/yaml v1.4.0
+)
+
+require (
+	github.com/davecgh/go-spew v1.1.2-0.20180830191138-d8f796af33cc // indirect
+	github.com/emicklei/go-restful/v3 v3.11.0 // indirect
+	github.com/evanphx/json-patch/v5 v5.9.0 // indirect
+	github.com/fxamacker/cbor/v2 v2.7.0 // indirect
+	github.com/gardener/gardener-extension-provider-aws v1.56.1 // indirect
+	github.com/gardener/gardener-extension-provider-gcp v1.37.0 // indirect
+	github.com/gardener/gardener-extension-provider-openstack v1.41.0 // indirect
+	github.com/go-logr/logr v1.4.2 // indirect
+	github.com/go-openapi/jsonpointer v0.21.0 // indirect
+	github.com/go-openapi/jsonreference v0.20.2 // indirect
+	github.com/go-openapi/swag v0.23.0 // indirect
+	github.com/gogo/protobuf v1.3.2 // indirect
+	github.com/golang/protobuf v1.5.4 // indirect
+	github.com/google/gnostic-models v0.6.8 // indirect
+	github.com/google/go-cmp v0.6.0 // indirect
+	github.com/google/gofuzz v1.2.0 // indirect
+	github.com/google/uuid v1.6.0 // indirect
+	github.com/imdario/mergo v0.3.16 // indirect
+	github.com/josharian/intern v1.0.0 // indirect
+	github.com/json-iterator/go v1.1.12 // indirect
+	github.com/mailru/easyjson v0.7.7 // indirect
+	github.com/modern-go/concurrent v0.0.0-20180306012644-bacd9c7ef1dd // indirect
+	github.com/modern-go/reflect2 v1.0.2 // indirect
+	github.com/munnerz/goautoneg v0.0.0-20191010083416-a7dc8b61c822 // indirect
+	github.com/onsi/gomega v1.34.1 // indirect
+	github.com/spf13/pflag v1.0.5 // indirect
+	github.com/x448/float16 v0.8.4 // indirect
+	golang.org/x/exp v0.0.0-20240909161429-701f63a606c0 // indirect
+	golang.org/x/net v0.29.0 // indirect
+	golang.org/x/oauth2 v0.22.0 // indirect
+	golang.org/x/sys v0.25.0 // indirect
+	golang.org/x/term v0.24.0 // indirect
+	golang.org/x/text v0.18.0 // indirect
+	golang.org/x/time v0.6.0 // indirect
+	google.golang.org/protobuf v1.34.2 // indirect
+	gopkg.in/inf.v0 v0.9.1 // indirect
+	gopkg.in/yaml.v2 v2.4.0 // indirect
+	gopkg.in/yaml.v3 v3.0.1 // indirect
+	k8s.io/apiextensions-apiserver v0.31.0 // indirect
+	k8s.io/klog/v2 v2.130.1 // indirect
+	k8s.io/kube-openapi v0.0.0-20240228011516-70dd3763d340 // indirect
+	k8s.io/utils v0.0.0-20240902221715-702e33fdd3c3 // indirect
+	sigs.k8s.io/json v0.0.0-20221116044647-bc3834ca7abd // indirect
+	sigs.k8s.io/structured-merge-diff/v4 v4.4.1 // indirect
+)
diff --git a/hack/runtime-migrator/go.sum b/hack/runtime-migrator/go.sum
new file mode 100644
index 00000000..d494a031
--- /dev/null
+++ b/hack/runtime-migrator/go.sum
@@ -0,0 +1,203 @@
+github.com/andybalholm/brotli v1.1.0 h1:eLKJA0d02Lf0mVpIDgYnqXcUn0GqVmEFny3VuID1U3M=
+github.com/andybalholm/brotli v1.1.0/go.mod h1:sms7XGricyQI9K10gOSf56VKKWS4oLer58Q+mhRPtnY=
+github.com/creack/pty v1.1.9/go.mod h1:oKZEueFk5CKHvIhNR5MUki03XCEU+Q6VDXinZuGJ33E=
+github.com/davecgh/go-spew v1.1.0/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38=
+github.com/davecgh/go-spew v1.1.1/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38=
+github.com/davecgh/go-spew v1.1.2-0.20180830191138-d8f796af33cc h1:U9qPSI2PIWSS1VwoXQT9A3Wy9MM3WgvqSxFWenqJduM=
+github.com/davecgh/go-spew v1.1.2-0.20180830191138-d8f796af33cc/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38=
+github.com/emicklei/go-restful/v3 v3.11.0 h1:rAQeMHw1c7zTmncogyy8VvRZwtkmkZ4FxERmMY4rD+g=
+github.com/emicklei/go-restful/v3 v3.11.0/go.mod h1:6n3XBCmQQb25CM2LCACGz8ukIrRry+4bhvbpWn3mrbc=
+github.com/evanphx/json-patch/v5 v5.9.0 h1:kcBlZQbplgElYIlo/n1hJbls2z/1awpXxpRi0/FOJfg=
+github.com/evanphx/json-patch/v5 v5.9.0/go.mod h1:VNkHZ/282BpEyt/tObQO8s5CMPmYYq14uClGH4abBuQ=
+github.com/fxamacker/cbor/v2 v2.7.0 h1:iM5WgngdRBanHcxugY4JySA0nk1wZorNOpTgCMedv5E=
+github.com/fxamacker/cbor/v2 v2.7.0/go.mod h1:pxXPTn3joSm21Gbwsv0w9OSA2y1HFR9qXEeXQVeNoDQ=
+github.com/gabriel-vasile/mimetype v1.4.3 h1:in2uUcidCuFcDKtdcBxlR0rJ1+fsokWf+uqxgUFjbI0=
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+github.com/go-openapi/jsonpointer v0.19.6/go.mod h1:osyAmYz/mB/C3I+WsTTSgw1ONzaLJoLCyoi6/zppojs=
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diff --git a/hack/runtime-migrator/input/converter_config.json b/hack/runtime-migrator/input/converter_config.json
new file mode 100644
index 00000000..5cf3ee20
--- /dev/null
+++ b/hack/runtime-migrator/input/converter_config.json
@@ -0,0 +1,26 @@
+{
+  "kubernetes": {
+    "defaultVersion": "1.29",
+    "enableKubernetesVersionAutoUpdate": true,
+    "enableMachineImageVersionAutoUpdate": false
+  },
+  "dns": {
+    "secretName": "aws-route53-secret-dev",
+    "domainPrefix": "dev.kyma.ondemand.com",
+    "providerType": "aws-route53"
+  },
+  "aws": {
+    "enableIMDSv2": "true"
+  },
+  "machineImage": {
+    "defaultName" : "gardenlinux",
+    "defaultVersion": "1592.1.0"
+  },
+  "auditLogging": {
+    "policyConfigMapName": "auditPlaceholder",
+    "tenantConfigPath": "placeholder.json"
+  },
+  "gardener": {
+    "projectName": "kyma-dev"
+  }
+}
\ No newline at end of file
diff --git a/hack/runtime-migrator/input/runtimeids_sample.json b/hack/runtime-migrator/input/runtimeids_sample.json
index 5425693e..b7243f6e 100644
--- a/hack/runtime-migrator/input/runtimeids_sample.json
+++ b/hack/runtime-migrator/input/runtimeids_sample.json
@@ -1,3 +1,4 @@
-{
-  7c6b4bd3-09d3-462f-b27c-992727b62eec,
-}
+[
+  "7c6b4bd3-09d3-462f-b27c-992727b62eec",
+  "another-id"
+]
diff --git a/hack/runtime-migrator/internal/comparator/comparator.go b/hack/runtime-migrator/internal/comparator/comparator.go
new file mode 100644
index 00000000..31d215c1
--- /dev/null
+++ b/hack/runtime-migrator/internal/comparator/comparator.go
@@ -0,0 +1,58 @@
+package comparator
+
+import (
+	"github.com/gardener/gardener/pkg/apis/core/v1beta1"
+	"github.com/kyma-project/infrastructure-manager/hack/shoot-comparator/pkg/shoot"
+	"github.com/pkg/errors"
+)
+
+type Result struct {
+	Equal bool
+	Diff  []Difference
+}
+
+type Difference struct {
+	ShootName  string
+	LeftShoot  v1beta1.Shoot
+	RightShoot v1beta1.Shoot
+	Message    string
+}
+
+func CompareShoots(leftShoot, rightShoot v1beta1.Shoot) (Result, error) {
+
+	differences, err := compare(leftShoot, rightShoot)
+	if err != nil {
+		return Result{}, err
+	}
+
+	equal := len(differences) == 0
+
+	return Result{
+		Equal: equal,
+		Diff:  differences,
+	}, nil
+}
+
+func compare(leftShoot, rightShoot v1beta1.Shoot) ([]Difference, error) {
+	var differences []Difference
+
+	matcher := shoot.NewMatcher(leftShoot)
+	equal, err := matcher.Match(rightShoot)
+	if err != nil {
+		return nil, err
+	}
+
+	if !equal {
+		if leftShoot.Name != rightShoot.Name {
+			return nil, errors.New("shoot names are different, stopping comparison")
+		}
+		diff := Difference{
+			ShootName:  leftShoot.Name,
+			LeftShoot:  leftShoot,
+			RightShoot: rightShoot,
+			Message:    matcher.FailureMessage(nil),
+		}
+		differences = append(differences, diff)
+	}
+	return differences, nil
+}
diff --git a/hack/runtime-migrator/internal/comparator/report.go b/hack/runtime-migrator/internal/comparator/report.go
new file mode 100644
index 00000000..dc026528
--- /dev/null
+++ b/hack/runtime-migrator/internal/comparator/report.go
@@ -0,0 +1,151 @@
+package comparator
+
+import (
+	"fmt"
+	"log"
+	"os"
+	"path"
+)
+
+type Report struct {
+	reportFile *os.File
+	contents   string
+}
+
+func SaveComparisonReport(comparisonResult Result, outputDir string, shootName string) (string, error) {
+	resultsDir, err := createOutputDir(outputDir, shootName)
+	if err != nil {
+		return "", err
+	}
+
+	report, err := newReport(resultsDir)
+	if err != nil {
+		return "", err
+	}
+	defer func() {
+		if err := report.Close(); err != nil {
+			log.Printf("Failed to close report file: %q", err)
+		}
+	}()
+
+	writeSummary(&report, comparisonResult, shootName)
+
+	if !comparisonResult.Equal {
+		err = writeDifferencesToReport(&report, comparisonResult.Diff)
+		if err != nil {
+			return "", fmt.Errorf("failed to write results to file: %v", err)
+		}
+
+		err = writeResultsToDiffFiles(comparisonResult.Diff, resultsDir)
+		if err != nil {
+			return "", fmt.Errorf("failed to write files with detected differences: %v", err)
+		}
+	}
+
+	return resultsDir, report.Save()
+}
+
+func newReport(resultsDir string) (Report, error) {
+	resultsFile := path.Join(resultsDir, "results.txt")
+
+	file, err := os.Create(resultsFile)
+	if err != nil {
+		return Report{}, fmt.Errorf("failed to create results file: %v", err)
+	}
+
+	return Report{
+		reportFile: file,
+	}, nil
+}
+
+func createOutputDir(outputDir, shootName string) (string, error) {
+	resultsDir := path.Join(outputDir, shootName)
+
+	err := os.MkdirAll(resultsDir, os.ModePerm)
+	if err != nil {
+		return "", fmt.Errorf("failed to create results directory: %v", err)
+	}
+
+	return resultsDir, nil
+}
+
+func (rw *Report) Save() error {
+	_, err := rw.reportFile.Write([]byte(rw.contents))
+
+	return err
+}
+
+func (rw *Report) Close() error {
+	if rw.reportFile != nil {
+		return rw.reportFile.Close()
+	}
+
+	return nil
+}
+
+func (rw *Report) AddLine(line string) {
+	rw.contents += line + "\n"
+}
+
+func writeSummary(report *Report, comparisonResult Result, shootName string) {
+	report.AddLine(fmt.Sprintf("Comparing generated Shoot with Shoot from Gardener, name: %s", shootName))
+	report.AddLine("")
+
+	if comparisonResult.Equal {
+		report.AddLine("No differences found.")
+	} else {
+		report.AddLine("Differences found.")
+	}
+}
+
+func writeDifferencesToReport(report *Report, differences []Difference) error {
+	if len(differences) == 0 {
+		return nil
+	}
+
+	report.AddLine("")
+	report.AddLine("------------------------------------------------------------------------------------------")
+	report.AddLine("Shoot that differ: ")
+
+	for _, difference := range differences {
+		msg := fmt.Sprintf("-%s", difference.ShootName)
+
+		report.AddLine(msg)
+	}
+
+	report.AddLine("------------------------------------------------------------------------------------------")
+
+	return nil
+}
+
+func writeResultsToDiffFiles(differences []Difference, resultsDir string) error {
+	writeAndCloseFunc := func(filePath string, text string) error {
+		file, err := os.Create(filePath)
+		if err != nil {
+			return err
+		}
+		defer func() {
+			if file != nil {
+				err := file.Close()
+				if err != nil {
+					fmt.Printf("failed to close file: %v", err)
+				}
+			}
+		}()
+
+		_, err = file.Write([]byte(text))
+
+		return err
+	}
+
+	for _, difference := range differences {
+		diffFile := path.Join(resultsDir, fmt.Sprintf("%s.diff", difference.ShootName))
+
+		err := writeAndCloseFunc(diffFile, difference.Message)
+		if err != nil {
+			return err
+		}
+	}
+
+	return nil
+}
diff --git a/hack/runtime-migrator/internal/config.go b/hack/runtime-migrator/internal/config.go
index 840c066e..9c1b5289 100644
--- a/hack/runtime-migrator/internal/config.go
+++ b/hack/runtime-migrator/internal/config.go
@@ -3,7 +3,10 @@ package internal
 import (
 	"flag"
 	"fmt"
+	gardener_shoot "github.com/kyma-project/infrastructure-manager/internal/gardener/shoot"
+	"io"
 	"log"
+	"os"
 
 	v1 "github.com/kyma-project/infrastructure-manager/api/v1"
 	corev1 "k8s.io/api/core/v1"
@@ -19,6 +22,7 @@ type Config struct {
 	OutputPath             string
 	IsDryRun               bool
 	InputType              string
+	ConverterConfigPath    string
 }
 
 const (
@@ -44,6 +48,7 @@ func NewConfig() Config {
 	flag.StringVar(&result.OutputPath, "output-path", "/tmp/", "Path where generated yamls will be saved. Directory has to exist.")
 	flag.BoolVar(&result.IsDryRun, "dry-run", true, "Dry-run flag. Has to be set to 'false' otherwise it will not apply the Custom Resources on the KCP cluster.")
 	flag.StringVar(&result.InputType, "input-type", InputTypeJSON, "Type of input to be used. Possible values: **all** (will migrate all gardener shoots), and **json** (will migrate only cluster whose runtimeIds were passed as an input, see the example hack/runtime-migrator/input/runtimeids_sample.json).")
+	flag.StringVar(&result.ConverterConfigPath, "converter-config-filepath", "/path/to/converter_config.json", "A file path to the Gardener Shoot converter configuration.")
 
 	flag.Parse()
 
@@ -99,3 +104,15 @@ func CreateKcpClient(cfg *Config) (client.Client, error) {
 
 	return k8sClient, nil
 }
+
+func LoadConverterConfig(cfg Config) (gardener_shoot.ConverterConfig, error) {
+	getReader := func() (io.Reader, error) {
+		return os.Open(cfg.ConverterConfigPath)
+	}
+	var converterConfig gardener_shoot.ConverterConfig
+	if err := converterConfig.Load(getReader); err != nil {
+		log.Print(err, "unable to load converter configuration")
+		return gardener_shoot.ConverterConfig{}, err
+	}
+	return converterConfig, nil
+}
diff --git a/hack/runtime-migrator/main.go b/hack/runtime-migrator/main.go
index da38ce41..d1f99383 100644
--- a/hack/runtime-migrator/main.go
+++ b/hack/runtime-migrator/main.go
@@ -4,6 +4,8 @@ import (
 	"context"
 	"encoding/json"
 	"fmt"
+	"github.com/kyma-project/infrastructure-manager/hack/runtime-migrator-app/internal/comparator"
+	gardener_shoot "github.com/kyma-project/infrastructure-manager/internal/gardener/shoot"
 	"log"
 	"os"
 	"slices"
@@ -12,7 +14,7 @@ import (
 	"github.com/gardener/gardener/pkg/apis/core/v1beta1"
 	gardener_types "github.com/gardener/gardener/pkg/client/core/clientset/versioned/typed/core/v1beta1"
 	v1 "github.com/kyma-project/infrastructure-manager/api/v1"
-	migrator "github.com/kyma-project/infrastructure-manager/hack/runtime-migrator/internal"
+	migrator "github.com/kyma-project/infrastructure-manager/hack/runtime-migrator-app/internal"
 	"github.com/kyma-project/infrastructure-manager/internal/gardener"
 	"github.com/kyma-project/infrastructure-manager/internal/gardener/kubeconfig"
 	"github.com/pkg/errors"
@@ -39,6 +41,12 @@ func main() {
 	migratorContext, cancel := context.WithTimeout(context.Background(), contextTimeout)
 	defer cancel()
 
+	converterConfig, err := migrator.LoadConverterConfig(cfg)
+	if err != nil {
+		log.Print("failed to read converterConfig file - ", err)
+		return
+	}
+
 	runtimeIDs := getRuntimeIDsFromStdin(cfg)
 	gardenerNamespace := fmt.Sprintf("garden-%s", cfg.GardenerProjectName)
 	list := getShootList(migratorContext, cfg, gardenerNamespace)
@@ -80,8 +88,39 @@ func main() {
 			results = appendResult(results, shoot, migrator.StatusFailedToCreateRuntimeCR, runtimeCrErr)
 			continue
 		}
+		// runtime cr -> shoot
+		converter := gardener_shoot.NewConverter(converterConfig)
+		shootFromConverter, err := converter.ToShoot(runtime)
+		if err != nil {
+			log.Print("Error during converting generated RuntimeCR to Shoot object - ", err)
+			continue
+		}
+
+		// compare Gardener shoot with shoot from converter
+		result, err := comparator.CompareShoots(shoot, shootFromConverter)
+		if err != nil {
+			log.Print("Error during comparing shoots - ", err)
+			continue
+		}
+
+		saveShootToFile("/tmp/"+shoot.Name+"/original_shoot.yaml", shoot)
+		saveShootToFile("/tmp/"+shoot.Name+"/converted_shoot.yaml", shootFromConverter)
 
-		err := saveRuntime(migratorContext, cfg, runtime, kcpClient)
+		// save comparison report with differences
+		resultsDir, err := comparator.SaveComparisonReport(result, cfg.OutputPath, shoot.Name)
+		if err != nil {
+			log.Print("Failed to save comparison report - ", err.Error())
+			continue
+		} else {
+			log.Printf("Results stored in %q", resultsDir)
+		}
+
+		if !result.Equal {
+			log.Print("Generated Shoot and Shoot from converter are not equal, stopping migration of shoot: ", shoot.Name)
+			continue
+		}
+
+		err = saveRuntime(migratorContext, cfg, runtime, kcpClient)
 		if err != nil {
 			log.Printf("Failed to apply runtime CR, %s\n", err)
 
@@ -435,10 +474,26 @@ func getAllRuntimeLabels(ctx context.Context, shoot v1beta1.Shoot, getClient mig
 	enrichedRuntimeLabels["kyma-project.io/region"] = gardenerCluster.Labels["kyma-project.io/region"]
 	enrichedRuntimeLabels["kyma-project.io/shoot-name"] = gardenerCluster.Labels["kyma-project.io/shoot-name"]
 	enrichedRuntimeLabels["operator.kyma-project.io/kyma-name"] = gardenerCluster.Labels["operator.kyma-project.io/kyma-name"]
-	// The runtime CR should be controlled by the KIM
-	enrichedRuntimeLabels["kyma-project.io/controlled-by-provisioner"] = "false"
+	// The runtime CR should be controlled by the KIM in dry-run mode
+	enrichedRuntimeLabels["kyma-project.io/controlled-by-provisioner"] = "true"
 	// add custom label for the migrator
 	enrichedRuntimeLabels[migratorLabel] = "true"
 
 	return enrichedRuntimeLabels, err
 }
+
+func saveShootToFile(filePath string, shoot interface{}) {
+	shootAsYaml, err := yaml.Marshal(shoot)
+	if err != nil {
+		log.Printf("Failed to marshal shoot to YAML: %s", err)
+		return
+	}
+
+	err = os.WriteFile(filePath, shootAsYaml, 0644)
+	if err != nil {
+		log.Printf("Failed to write shoot to file %s: %s", filePath, err)
+		return
+	}
+
+	log.Printf("Shoot has been saved to %s\n", filePath)
+}