subscript out of bounds while running EBSeqHMMTest

[AtheerAS]

Hi all,

I got the following error when trying to run EBSeqHMMTest

Error in `[<-`(`*tmp*`, , i + 1, value = apply(tt2, 1, median)) : 
  subscript out of bounds

My code:

EBSeqHMMIsoOut <- EBSeqHMMTest(Data = IsoData,
                               NgVector = IsoNgTrun,
                               sizeFactors = IsoSizes,
                               Conditions = conditions,
                               UpdateRd = 5)

What is the possible reason?

I tried changing the UpdateRd, didn't work.
I tried a few other ways and nothing solved it :(

[blairperry]

@AtheerAS Did you ever resolve this issue? I'm running into the same problem

[liulihe954]

I'm running into the same problem.