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revcomp bug? #18

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bernardo1963 opened this issue Sep 26, 2015 · 1 comment
Open

revcomp bug? #18

bernardo1963 opened this issue Sep 26, 2015 · 1 comment

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@bernardo1963
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Hi,
May be I am missing something. But below seemed weird to me:

bioawk 'BEGIN{a="TTTT" ; print a , revcomp(a) }'
TTTT AAAA

bioawk 'BEGIN{a="TTTT" ; b=revcomp(a); print a,b }'
AAAA AAAA

I am using a Dell PE2900 server, running CentOS 6.

Bernardo
@lh3
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lh3 commented Sep 26, 2015

revcomp()/reverse() and quality trimming all change the input sequence in place. Agree that this is surprising...

ctSkennerton pushed a commit to ctSkennerton/bioawk that referenced this issue May 22, 2019
@onetrueawk
Merge pull request lh3#18 from melloc/error-reporting
294f4c0 
Improve error reporting messages
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@lh3 @bernardo1963