R-CMD-check-in-rhub-images.yml

name: R CMD check in rhub images

on:
  push:
  pull_request:
  schedule:
    - cron: '0 2 * * SAT'

env:
  PACKAGE_NAME: libkrigingtemplate

jobs:
  rhub-local_check:
    name: Linux ${{ matrix.rhubos }}
    strategy:
      fail-fast: false
      matrix:
        #rhub::local_check_linux_images()
        rhubos: [ 'debian-clang-devel','debian-gcc-devel','debian-gcc-devel-nold','debian-gcc-patched','debian-gcc-release','fedora-clang-devel','fedora-gcc-devel','rocker-gcc-san','ubuntu-gcc-devel','ubuntu-gcc-release' ]
        # not suitable for compile: ,'ubuntu-rchk' ]

    runs-on: ubuntu-latest
    container:
      image: rhub/${{ matrix.rhubos }}
      options: --user root

    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      BRANCH_NAME: ${{ github.head_ref || github.ref_name }}

    steps:
      - uses: actions/checkout@v3

      - uses: actions-rs/toolchain@v1
        with:
          toolchain: stable
          override: true

      - name: Add dependencies
        shell: bash
        run: |
          DIST_ID=$(cat /etc/*-release | grep ID | cut -d= -f2 | head -1 | tr -d '\t')
          if [ "${DIST_ID}" = "fedora" ]; then
            dnf install -y git cmake gfortran libcurl-devel libxml2-devel openssl-devel fontconfig-devel hdf5-devel;
          else 
            apt-get update
            apt-get install -y git cmake gfortran libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev libxml2-dev libssl-dev libfontconfig1-dev libhdf5-dev
          fi

      - name: Add workaround dependencies
        shell: bash
        run: |
          apt install -y libc++-dev libc++abi-dev
        if: matrix.rhubos == 'debian-clang-devel'

      - name: Remove tmp requirements
        shell: bash
        run: |
          DIST_ID=$(cat /etc/*-release | grep ID | cut -d= -f2 | head -1 | tr -d '\t')
          if [ "${DIST_ID}" = "fedora" ]; then
            dnf remove -y git;
          else 
            apt-get remove -y git;
          fi

      - name: Install devtools
        shell: bash
        run: |
          # Add --insecure to workaround missing certificates on Windows
          # --header is not required by an useful example if the repo becomes private 
          curl --insecure --header 'authorization: Bearer ${{ secrets.GITHUB_TOKEN }}' -LO https://raw.githubusercontent.com/libKriging/${{ env.PACKAGE_NAME }}/${{ env.BRANCH_NAME }}/tools/install_packages.R
          export PATH=$PATH:/opt/R-devel/bin/:/opt/R-patched/bin/:/opt/R/bin
          Rscript --no-save ./install_packages.R devtools

      - name: devtools install_deps from ${{ env.BRANCH_NAME }}
        shell: bash
        run: |
          export PATH=$PATH:/opt/R-devel/bin/:/opt/R-patched/bin/:/opt/R/bin
          Rscript -e "library(devtools); install_deps('.',dependencies = TRUE)"

      - name: setup for CRAN
        shell: bash
        run: |
          export PATH=$PATH:/opt/R-devel/bin/:/opt/R-patched/bin/:/opt/R/bin
          Rscript --no-save ./install_packages.R roxygen2
          Rscript -e "remove.packages('roxygen2')"

      - name: R CMD build
        shell: bash
        env: # this alias helps to reuse following line as script
          OS: ${{ matrix.rhubos }}
        run: |
          export PATH=$PATH:/opt/R-devel/bin/:/opt/R-patched/bin/:/opt/R/bin
          R CMD build .
          mkdir CRAN-$OS
          mv ${{ env.PACKAGE_NAME }}_*.* CRAN-$OS/.

      - name: R CMD check
        shell: bash
        env:
          OS: ${{ matrix.rhubos }}
        run: |
          export PATH=$PATH:/opt/R-devel/bin/:/opt/R-patched/bin/:/opt/R/bin
          R CMD check --as-cran --no-manual CRAN-$OS/${{ env.PACKAGE_NAME }}* || (
            test -f ${{ env.PACKAGE_NAME }}.Rcheck/00install.out && cat ${{ env.PACKAGE_NAME }}.Rcheck/00install.out | sed -e 's/^/00install.out| /' && echo "[The error may be shown before 00install.out| listing"; 
            exit 1
          )