From 350d651822cdcfa1b67b3c867f429973a7f43a87 Mon Sep 17 00:00:00 2001
From: cmungall <cjm@berkeleybop.org>
Date: Tue, 2 Jan 2024 18:07:22 -0800
Subject: [PATCH] lint

---
 notebooks/Tutorial.ipynb                      | 92 +++++++++----------
 src/linkml_transformer/session.py             |  2 +-
 .../test_object_transformer.py                |  2 +-
 3 files changed, 48 insertions(+), 48 deletions(-)

diff --git a/notebooks/Tutorial.ipynb b/notebooks/Tutorial.ipynb
index 3d2974e..84008af 100644
--- a/notebooks/Tutorial.ipynb
+++ b/notebooks/Tutorial.ipynb
@@ -24,8 +24,8 @@
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     "collapsed": false,
     "ExecuteTime": {
-     "end_time": "2024-01-03T02:03:47.468801Z",
-     "start_time": "2024-01-03T02:03:47.442848Z"
+     "end_time": "2024-01-03T02:07:05.802136Z",
+     "start_time": "2024-01-03T02:07:05.768310Z"
     }
    },
    "id": "63a064b31f623bdd"
@@ -97,8 +97,8 @@
    "metadata": {
     "collapsed": false,
     "ExecuteTime": {
-     "end_time": "2024-01-03T02:03:47.736863Z",
-     "start_time": "2024-01-03T02:03:47.473474Z"
+     "end_time": "2024-01-03T02:07:06.074890Z",
+     "start_time": "2024-01-03T02:07:05.802747Z"
     }
    },
    "id": "ef2c60ef7fbcbe20"
@@ -136,8 +136,8 @@
    "metadata": {
     "collapsed": false,
     "ExecuteTime": {
-     "end_time": "2024-01-03T02:03:47.806549Z",
-     "start_time": "2024-01-03T02:03:47.736781Z"
+     "end_time": "2024-01-03T02:07:06.134479Z",
+     "start_time": "2024-01-03T02:07:06.074052Z"
     }
    },
    "id": "a6257aa9e6ab021e"
@@ -166,8 +166,8 @@
    "metadata": {
     "collapsed": false,
     "ExecuteTime": {
-     "end_time": "2024-01-03T02:03:48.040675Z",
-     "start_time": "2024-01-03T02:03:47.847069Z"
+     "end_time": "2024-01-03T02:07:06.368605Z",
+     "start_time": "2024-01-03T02:07:06.138171Z"
     }
    },
    "id": "47b95e209790b423"
@@ -191,7 +191,7 @@
     {
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-      "text/plain": "<graphviz.graphs.Digraph at 0x7f84506a7850>"
+      "text/plain": "<graphviz.graphs.Digraph at 0x7f851874a250>"
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@@ -204,8 +204,8 @@
    "metadata": {
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     "ExecuteTime": {
-     "end_time": "2024-01-03T02:03:48.389835Z",
-     "start_time": "2024-01-03T02:03:48.043124Z"
+     "end_time": "2024-01-03T02:07:06.816125Z",
+     "start_time": "2024-01-03T02:07:06.369496Z"
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    "id": "1c623cdc3c1cfbca"
@@ -249,8 +249,8 @@
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     "collapsed": false,
     "ExecuteTime": {
-     "end_time": "2024-01-03T02:03:48.401199Z",
-     "start_time": "2024-01-03T02:03:48.396533Z"
+     "end_time": "2024-01-03T02:07:06.829871Z",
+     "start_time": "2024-01-03T02:07:06.823308Z"
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    "id": "9f4d1fc4ca97f80c"
@@ -336,8 +336,8 @@
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     "ExecuteTime": {
-     "end_time": "2024-01-03T02:03:48.424849Z",
-     "start_time": "2024-01-03T02:03:48.400132Z"
+     "end_time": "2024-01-03T02:07:06.853312Z",
+     "start_time": "2024-01-03T02:07:06.832158Z"
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@@ -398,8 +398,8 @@
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-     "end_time": "2024-01-03T02:03:48.467138Z",
-     "start_time": "2024-01-03T02:03:48.465161Z"
+     "end_time": "2024-01-03T02:07:06.903169Z",
+     "start_time": "2024-01-03T02:07:06.848243Z"
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@@ -422,7 +422,7 @@
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-      "text/plain": "<graphviz.graphs.Digraph at 0x7f843810f490>"
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@@ -435,8 +435,8 @@
    "metadata": {
     "collapsed": false,
     "ExecuteTime": {
-     "end_time": "2024-01-03T02:03:48.749473Z",
-     "start_time": "2024-01-03T02:03:48.474494Z"
+     "end_time": "2024-01-03T02:07:07.250708Z",
+     "start_time": "2024-01-03T02:07:06.913474Z"
     }
    },
    "id": "2a18ccb5d7dc469b"
@@ -470,8 +470,8 @@
    "metadata": {
     "collapsed": false,
     "ExecuteTime": {
-     "end_time": "2024-01-03T02:03:48.756162Z",
-     "start_time": "2024-01-03T02:03:48.751935Z"
+     "end_time": "2024-01-03T02:07:07.250930Z",
+     "start_time": "2024-01-03T02:07:07.244685Z"
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@@ -528,8 +528,8 @@
    "metadata": {
     "collapsed": false,
     "ExecuteTime": {
-     "end_time": "2024-01-03T02:03:48.763217Z",
-     "start_time": "2024-01-03T02:03:48.759698Z"
+     "end_time": "2024-01-03T02:07:07.256503Z",
+     "start_time": "2024-01-03T02:07:07.252109Z"
     }
    },
    "id": "7c1f7efef1836364"
@@ -608,8 +608,8 @@
    "metadata": {
     "collapsed": false,
     "ExecuteTime": {
-     "end_time": "2024-01-03T02:03:48.806746Z",
-     "start_time": "2024-01-03T02:03:48.772586Z"
+     "end_time": "2024-01-03T02:07:07.271763Z",
+     "start_time": "2024-01-03T02:07:07.266055Z"
     }
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@@ -649,8 +649,8 @@
    "metadata": {
     "collapsed": false,
     "ExecuteTime": {
-     "end_time": "2024-01-03T02:03:48.834504Z",
-     "start_time": "2024-01-03T02:03:48.821147Z"
+     "end_time": "2024-01-03T02:07:07.329627Z",
+     "start_time": "2024-01-03T02:07:07.293054Z"
     }
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    "id": "bc99bad97970b1b7"
@@ -674,8 +674,8 @@
    "metadata": {
     "collapsed": false,
     "ExecuteTime": {
-     "end_time": "2024-01-03T02:03:49.116895Z",
-     "start_time": "2024-01-03T02:03:48.838545Z"
+     "end_time": "2024-01-03T02:07:07.635126Z",
+     "start_time": "2024-01-03T02:07:07.330891Z"
     }
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@@ -734,8 +734,8 @@
    "metadata": {
     "collapsed": false,
     "ExecuteTime": {
-     "end_time": "2024-01-03T02:03:49.123023Z",
-     "start_time": "2024-01-03T02:03:49.119216Z"
+     "end_time": "2024-01-03T02:07:07.640576Z",
+     "start_time": "2024-01-03T02:07:07.635834Z"
     }
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    "id": "b589e0e95550962d"
@@ -760,8 +760,8 @@
    "metadata": {
     "collapsed": false,
     "ExecuteTime": {
-     "end_time": "2024-01-03T02:03:49.125268Z",
-     "start_time": "2024-01-03T02:03:49.123133Z"
+     "end_time": "2024-01-03T02:07:07.645267Z",
+     "start_time": "2024-01-03T02:07:07.640190Z"
     }
    },
    "id": "f492b27c0f0fbf88"
@@ -776,8 +776,8 @@
    "metadata": {
     "collapsed": false,
     "ExecuteTime": {
-     "end_time": "2024-01-03T02:03:49.128462Z",
-     "start_time": "2024-01-03T02:03:49.126778Z"
+     "end_time": "2024-01-03T02:07:07.648640Z",
+     "start_time": "2024-01-03T02:07:07.643720Z"
     }
    },
    "id": "3ac3f93ab8561300"
@@ -792,8 +792,8 @@
    "metadata": {
     "collapsed": false,
     "ExecuteTime": {
-     "end_time": "2024-01-03T02:03:49.150469Z",
-     "start_time": "2024-01-03T02:03:49.136088Z"
+     "end_time": "2024-01-03T02:07:07.683985Z",
+     "start_time": "2024-01-03T02:07:07.654269Z"
     }
    },
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@@ -825,8 +825,8 @@
    "metadata": {
     "collapsed": false,
     "ExecuteTime": {
-     "end_time": "2024-01-03T02:03:49.193334Z",
-     "start_time": "2024-01-03T02:03:49.160562Z"
+     "end_time": "2024-01-03T02:07:07.715300Z",
+     "start_time": "2024-01-03T02:07:07.674231Z"
     }
    },
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@@ -858,8 +858,8 @@
    "metadata": {
     "collapsed": false,
     "ExecuteTime": {
-     "end_time": "2024-01-03T02:03:49.224701Z",
-     "start_time": "2024-01-03T02:03:49.196222Z"
+     "end_time": "2024-01-03T02:07:07.747368Z",
+     "start_time": "2024-01-03T02:07:07.716444Z"
     }
    },
    "id": "fdd23ae82909770e"
@@ -909,8 +909,8 @@
    "metadata": {
     "collapsed": false,
     "ExecuteTime": {
-     "end_time": "2024-01-03T02:03:49.266887Z",
-     "start_time": "2024-01-03T02:03:49.223609Z"
+     "end_time": "2024-01-03T02:07:07.789903Z",
+     "start_time": "2024-01-03T02:07:07.759627Z"
     }
    },
    "id": "e8c1c3f98081d38"
@@ -923,8 +923,8 @@
    "metadata": {
     "collapsed": false,
     "ExecuteTime": {
-     "end_time": "2024-01-03T02:03:49.269348Z",
-     "start_time": "2024-01-03T02:03:49.266616Z"
+     "end_time": "2024-01-03T02:07:07.793832Z",
+     "start_time": "2024-01-03T02:07:07.788230Z"
     }
    },
    "id": "ee14ace4b1c7d256"
diff --git a/src/linkml_transformer/session.py b/src/linkml_transformer/session.py
index 036e08c..6c782ec 100644
--- a/src/linkml_transformer/session.py
+++ b/src/linkml_transformer/session.py
@@ -11,7 +11,7 @@
 from linkml_transformer import ObjectTransformer
 from linkml_transformer.inference.inverter import TransformationSpecificationInverter
 from linkml_transformer.inference.schema_mapper import SchemaMapper
-from project.transformer_model import TransformationSpecification
+from linkml_transformer.datamodel.transformer_model import TransformationSpecification
 
 logger = logging.getLogger(__name__)
 
diff --git a/tests/test_transformer/test_object_transformer.py b/tests/test_transformer/test_object_transformer.py
index c9eb679..5630979 100644
--- a/tests/test_transformer/test_object_transformer.py
+++ b/tests/test_transformer/test_object_transformer.py
@@ -295,7 +295,7 @@ def test_denormalized_transform_dict(self):
         assert mset["entities"] == {"X:1": {"name": "x1"}, "Y:1": {"name": "y1"}}
         tr.index(mset, "MappingSet")
         target_obj = tr.transform(mset, source_type="MappingSet")
-        assert type(target_obj) == dict
+        assert isinstance(target_obj, dict)
         assert target_obj["mappings"][0] == {
             "subject_id": "X:1",
             "subject_name": "x1",