README.md

GeneClear

At present there is no detailed manual for this application, you will simply have to play around and see what happens.

使用方法

下载GeneClear-0.0.0-py3-none-any.whl文件到本地 然后

pip install GeneClear-0.0.0-py3-none-any.whl

输出帮助文件：

GeneClear -h

输出：

usage: GeneClear [options]

runing GeneClear --------------------------------------

options:

-h, --help show this help message and exit

-v, --version show program's version number and exit

-getpasa GETPASA get_PASA

-getncbi GETNCBI get_NCBI

-vgo VISUALIZATION_GO

Visualization_GO

-pf PRIMER_FINDER Primer finder

使用方法详见CSDN或知乎https://zhuanlan.zhihu.com/p/660795982

GO富集可视化！

查看配置文件：

GeneClear -vgo ?

[Visualization_GO]

#脚本适用于TBtools的GO富集可视化

TB_file = TBtools file

Class_dic = Biological process:#0095d9,Molecular function:#f39800,Cellular component:#d7003a

top = 20

savefile = save file (*.png, *.pdf, *.svg)

文件说明：

TB_file = TBtools file

#TBtools的GO聚类结果文件

Class_dic = Biological process:#0095d9,Molecular function:#f39800,Cellular component:#d7003a

#三种类型的颜色配置

top = 20

#保留富集程度最高的前20个

savefile = save file (*.png, *.pdf, *.svg)

#保存文件 svg方便后续拼图或者精修！

配置文件重定向：

GeneClear -vgo ? >total.conf

GeneClear -vgo ? >> total.conf

运行：

GeneClear -vgo total.conf