From 6df898ca874361a6e3a124981f82affbe8eb9071 Mon Sep 17 00:00:00 2001
From: Liang-Jun Zhu <crazyzlj@gmail.com>
Date: Fri, 7 Jun 2024 00:33:21 +0800
Subject: [PATCH] Test Dockerfile

---
 .github/workflows/delopy_image_ghcr.yml | 53 +++++++++++++++++++++++++
 Dockerfile                              | 34 ++++++++++++++++
 2 files changed, 87 insertions(+)
 create mode 100644 .github/workflows/delopy_image_ghcr.yml
 create mode 100644 Dockerfile

diff --git a/.github/workflows/delopy_image_ghcr.yml b/.github/workflows/delopy_image_ghcr.yml
new file mode 100644
index 000000000..432c5572c
--- /dev/null
+++ b/.github/workflows/delopy_image_ghcr.yml
@@ -0,0 +1,53 @@
+name: Create and publish SEIMS Docker image
+
+# Configures this workflow to run every time a change is pushed to the branches.
+on:
+  push:
+    branches:
+        - 'dev'
+
+# Defines two custom environment variables for the workflow. These are used for the Container registry domain, and a name for the Docker image that this workflow builds.
+env:
+  REGISTRY: ghcr.io
+  IMAGE_NAME: ${{ github.repository }}
+
+# There is a single job in this workflow. It's configured to run on the latest available version of Ubuntu.
+jobs:
+  build-and-push-image:
+    runs-on: ubuntu-latest
+    # Sets the permissions granted to the `GITHUB_TOKEN` for the actions in this job.
+    permissions:
+      contents: read
+      packages: write
+      #
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+      # Uses the `docker/login-action` action to log in to the Container registry registry using the account and password that will publish the packages. Once published, the packages are scoped to the account defined here.
+      # https://github.com/marketplace/actions/docker-login#github-container-registry
+      - name: Log in to the Container registry
+        uses: docker/login-action@v3
+        with:
+          registry: ${{ env.REGISTRY }}
+          username: ${{ github.actor }}
+          password: ${{ secrets.GITHUB_TOKEN }}
+      # This step uses [docker/metadata-action](https://github.com/docker/metadata-action#about) to extract tags and labels that will be applied to the specified image. The `id` "meta" allows the output of this step to be referenced in a subsequent step. The `images` value provides the base name for the tags and labels.
+      - name: Extract metadata (tags, labels) for Docker
+        id: meta
+        uses: docker/metadata-action@v5
+        with:
+          images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}
+      # This step uses the `docker/build-push-action` action to build the image, based on your repository's `Dockerfile`. If the build succeeds, it pushes the image to GitHub Packages.
+      # It uses the `context` parameter to define the build's context as the set of files located in the specified path. For more information, see "[Usage](https://github.com/docker/build-push-action#usage)" in the README of the `docker/build-push-action` repository.
+      # It uses the `tags` and `labels` parameters to tag and label the image with the output from the "meta" step.
+      # https://github.com/marketplace/actions/docker-setup-buildx
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v3
+      - name: Build SEIMS
+        uses: docker/build-push-action@v5
+        with:
+          context: .
+          file: ./Dockerfile
+          #platforms: linux/amd64,linux/arm64
+          push: true
+          tags: ghcr.io/lreis2415/seims:latest
diff --git a/Dockerfile b/Dockerfile
new file mode 100644
index 000000000..b1e30427f
--- /dev/null
+++ b/Dockerfile
@@ -0,0 +1,34 @@
+##
+#
+# Usage:
+#   > cd SEIMS
+#   > docker build -t <tag>  .
+#
+# Copyright 2024 Liang-Jun Zhu <zlj@lreis.ac.cn>
+#
+
+# Use continuumio/miniconda3 as the build and test container, which is based on debian:12.5-slim
+# https://github.com/ContinuumIO/docker-images/blob/main/miniconda3/debian/Dockerfile
+FROM continuumio/miniconda3 as builder
+
+LABEL maintainer="Liang-Jun Zhu <zlj@lreis.ac.cn>"
+
+# RUN apt-get update -q && \
+#     apt-get install -q -y --no-install-recommends \
+#     cmake make g++ gdal-bin openmpi-bin libgdal-dev libopenmpi-dev \
+#     && apt-get clean \
+#     && rm -rf /var/lib/apt/lists/*
+
+# Copy source directory
+WORKDIR /seims
+COPY CMakeLists.txt .
+COPY cmake cmake
+COPY seims seims
+
+# Refers to https://pythonspeed.com/articles/activate-conda-dockerfile/
+RUN conda env create -f ./seims/environment.yml
+
+# Make RUN commands use the new environment:
+SHELL ["conda", "run", "--no-capture-output", "-n", "pyseims", "/bin/bash", "-c"]
+
+RUN python ./seims/pyseims_check.py