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environment_cytophenograph6_linux.yml
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environment_cytophenograph6_linux.yml
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name: Cytophenograph6
channels:
- anaconda
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1
- _openmp_mutex=4.5
- _r-mutex=1.0.1
- aom=3.5.0
- appdirs=1.4.4
- binutils_impl_linux-64=2.39
- bioconductor-biobase=2.58.0
- bioconductor-biocgenerics=0.44.0
- bioconductor-cytolib=2.10.0
- bioconductor-flowai=1.28.0
- bioconductor-flowcore=2.10.0
- bioconductor-rhdf5lib=1.20.0
- bioconductor-rprotobuflib=2.10.0
- bioconductor-s4vectors=0.36.0
- blosc=1.21.3
- brotli=1.0.9
- brotli-bin=1.0.9
- brotlipy=0.7.0
- brunsli=0.1
- bwidget=1.9.14
- bzip2=1.0.8
- c-ares=1.18.1
- c-blosc2=2.6.1
- ca-certificates=2022.12.7
- cairo=1.16.0
- cffi=1.15.1
- cfitsio=4.2.0
- charls=2.4.1
- click=8.1.3
- cloudpickle=2.2.1
- colorcet=3.0.1
- contourpy=1.0.7
- cryptography=39.0.0
- curl=7.87.0
- cycler=0.11.0
- cytoolz=0.12.0
- dask-core=2023.1.0
- datashader=0.14.3
- dav1d=1.0.0
- et_xmlfile=1.1.0
- expat=2.5.0
- fbpca=1.0
- font-ttf-dejavu-sans-mono=2.37
- font-ttf-inconsolata=3.000
- font-ttf-source-code-pro=2.038
- font-ttf-ubuntu=0.83
- fontconfig=2.14.1
- fonts-conda-ecosystem=1
- fonts-conda-forge=1
- fonttools=4.38.0
- freetype=2.12.1
- fribidi=1.0.10
- fsspec=2023.1.0
- gcc_impl_linux-64=12.2.0
- geosketch=1.2
- gettext=0.21.1
- gfortran_impl_linux-64=12.2.0
- giflib=5.2.1
- glib=2.74.1
- glib-tools=2.74.1
- graphite2=1.3.14
- gsl=2.7.1
- gxx_impl_linux-64=12.2.0
- harfbuzz=6.0.0
- hnswlib=0.6.2
- icu=70.1
- idna=3.4
- imagecodecs=2022.12.24
- imageio=2.25.0
- intervaltree=3.1.0
- joblib=1.2.0
- jpeg=9e
- jxrlib=1.1
- kernel-headers_linux-64=2.6.32
- keyutils=1.6.1
- kiwisolver=1.4.4
- krb5=1.20.1
- lcms2=2.14
- ld_impl_linux-64=2.39
- lerc=4.0.0
- libaec=1.0.6
- libavif=0.11.1
- libblas=3.9.0
- libbrotlicommon=1.0.9
- libbrotlidec=1.0.9
- libbrotlienc=1.0.9
- libcblas=3.9.0
- libcurl=7.87.0
- libdeflate=1.17
- libedit=3.1.20221030
- libev=4.33
- libffi=3.4.2
- libgcc-devel_linux-64=12.2.0
- libgcc-ng=12.2.0
- libgfortran-ng=12.2.0
- libgfortran5=12.2.0
- libglib=2.74.1
- libgomp=12.2.0
- libiconv=1.17
- liblapack=3.9.0
- libllvm11=11.1.0
- libnghttp2=1.51.0
- libopenblas=0.3.21
- libpng=1.6.39
- libsanitizer=12.2.0
- libssh2=1.10.0
- libstdcxx-devel_linux-64=12.2.0
- libstdcxx-ng=12.2.0
- libtiff=4.5.0
- libuuid=2.32.1
- libwebp=1.2.4
- libwebp-base=1.2.4
- libxcb=1.15
- libxml2=2.10.3
- libzlib=1.2.13
- libzopfli=1.0.3
- locket=1.0.0
- lz4-c=1.9.4
- make=4.3
- matplotlib-base=3.6.3
- munkres=1.1.4
- ncurses=6.3
- networkx=3.0
- numba=0.56.4
- numpy=1.23.5
- openjpeg=2.5.0
- openpyxl=3.0.10
- openssl=1.1.1s
- packaging=23.0
- pandoc=2.19.2
- pango=1.50.12
- param=1.12.3
- partd=1.3.0
- pcre2=10.40
- pip=22.3.1
- pixman=0.40.0
- pooch=1.6.0
- pycparser=2.21
- pyct=0.4.8
- pyopenssl=23.0.0
- pyparsing=3.0.9
- pysocks=1.7.1
- python=3.9.16
- python-annoy=1.17.1
- python-dateutil=2.8.2
- python_abi=3.9
- pytz=2022.7.1
- pywavelets=1.4.1
- pyyaml=6.0
- r-base=4.2.2
- r-base64enc=0.1_3
- r-bh=1.81.0_1
- r-bslib=0.4.2
- r-cachem=1.0.6
- r-changepoint=2.2.4
- r-cli=3.6.0
- r-colorspace=2.0_3
- r-cpp11=0.4.3
- r-crayon=1.5.2
- r-digest=0.6.31
- r-ellipsis=0.3.2
- r-evaluate=0.20
- r-fansi=1.0.4
- r-farver=2.1.1
- r-fastmap=1.1.0
- r-fs=1.5.2
- r-ggplot2=3.4.0
- r-glue=1.6.2
- r-gtable=0.3.1
- r-highr=0.10
- r-htmltools=0.5.4
- r-isoband=0.2.7
- r-jquerylib=0.1.4
- r-jsonlite=1.8.4
- r-knitr=1.41
- r-labeling=0.4.2
- r-lattice=0.20_45
- r-lifecycle=1.0.3
- r-magrittr=2.0.3
- r-mass=7.3_58.1
- r-matrix=1.5_3
- r-matrixstats=0.63.0
- r-memoise=2.0.1
- r-mgcv=1.8_41
- r-mime=0.12
- r-munsell=0.5.0
- r-nlme=3.1_161
- r-pillar=1.8.1
- r-pkgconfig=2.0.3
- r-plyr=1.8.8
- r-r6=2.5.1
- r-rappdirs=0.3.3
- r-rcolorbrewer=1.1_3
- r-rcpp=1.0.10
- r-reshape2=1.4.4
- r-rlang=1.0.6
- r-rmarkdown=2.20
- r-sass=0.4.4
- r-scales=1.2.1
- r-stringi=1.7.12
- r-stringr=1.5.0
- r-tibble=3.1.8
- r-tinytex=0.43
- r-utf8=1.2.2
- r-vctrs=0.5.1
- r-viridislite=0.4.1
- r-withr=2.5.0
- r-xfun=0.36
- r-yaml=2.3.6
- r-zoo=1.8_11
- readline=8.2
- requests=2.28.2
- scanorama=1.7.3
- scikit-image=0.19.3
- scikit-learn=1.2.0
- sed=4.8
- setuptools=66.1.1
- six=1.16.0
- snappy=1.1.9
- sortedcontainers=2.4.0
- sqlite=3.40.1
- sysroot_linux-64=2.12
- threadpoolctl=3.1.0
- tk=8.6.12
- tktable=2.10
- toolz=0.12.0
- tzdata=2022g
- unicodedata2=15.0.0
- urllib3=1.26.14
- wheel=0.38.4
- xarray=2023.1.0
- xorg-kbproto=1.0.7
- xorg-libice=1.0.10
- xorg-libsm=1.2.3
- xorg-libx11=1.7.2
- xorg-libxt=1.2.1
- xorg-xproto=7.0.31
- xz=5.2.10
- yaml=0.2.5
- zfp=1.0.0
- zlib=1.2.13
- zlib-ng=2.0.6
- zstd=1.5.2
- pip:
- anndata==0.8.0
- beautifulsoup4==4.11.1
- certifi==2022.12.7
- charset-normalizer==3.0.1
- datashape==0.5.2
- decorator==5.1.1
- deprecated==1.2.13
- fcsparser==0.2.4
- fcsy==0.10.0
- filelock==3.9.0
- flowcytometrytools==0.5.1
- future==0.18.3
- gdown==4.6.0
- graphtools==1.5.3
- h5py==3.8.0
- igraph==0.10.3
- leidenalg==0.9.1
- llvmlite==0.39.1
- minisom==2.3.0
- multipledispatch==0.6.0
- natsort==8.2.0
- pandas==1.3.5
- patsy==0.5.3
- phate==1.0.10
- phenograph==1.5.7
- pillow==9.4.0
- progressbar2==4.2.0
- psutil==5.9.4
- pybind11==2.10.3
- pygam==0.8.0
- pygsp==0.5.1
- pynndescent==0.5.8
- python-utils==3.4.5
- pyvia==0.1.73
- s-gd2==1.8.1
- scanpy==1.9.1
- scipy==1.10.0
- scprep==1.2.1
- seaborn==0.12.2
- session-info==1.0.0
- soupsieve==2.3.2.post1
- statsmodels==0.13.5
- stdlib-list==0.8.0
- tasklogger==1.2.0
- termcolor==2.2.0
- texttable==1.6.7
- tifffile==2023.1.23.1
- tqdm==4.64.1
- umap-learn==0.5.3
- wget==3.2
- wrapt==1.14.1