pyproject.toml

[build-system]
requires = ["setuptools<69.3", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "lumicks.pylake"
dynamic = ["version"]
requires-python = ">= 3.10"
authors = [
    {name = "Lumicks B.V."},
    {email = "devteam@lumicks.com"},
]
readme = {file="README.md", content-type = "text/markdown"}
license = {file = "license.md"}
keywords = ["optical tweezers", "kymographs", "data analysis", "lumicks"]
classifiers=[
    "Development Status :: 5 - Production/Stable",
    "Intended Audience :: Science/Research",
    "Topic :: Scientific/Engineering :: Physics",
    "Operating System :: OS Independent",
    "Programming Language :: Python :: 3 :: Only",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: Implementation :: CPython",
]
dependencies = [
    "pytest>=3.5",
    "h5py>=3.4, <4",
    "numpy>=1.24",  # 1.24 is needed for dtype in vstack/hstack (Dec 18th, 2022)
    "scipy>=1.9, <2",  # 1.9.0 needed for lazy imports (July 29th, 2022)
    "matplotlib>=3.8",
    "tifffile>=2022.7.28",
    "tabulate>=0.8.8, <0.9",
    "cachetools>=3.1",
    "deprecated>=1.2.8",
    "scikit-learn>=0.18.0",
    "scikit-image>=0.17.2",
    "tqdm>=4.27.0",  # 4.27.0 introduced tqdm.auto which auto-selects notebook or console
]
description = "Bluelake data analysis tools"

[project.urls]
Homepage = "https://github.com/lumicks/pylake"
Documentation = "https://lumicks-pylake.readthedocs.io/en/stable/"
Source = "https://github.com/lumicks/pylake"

[project.optional-dependencies]
notebook = [
    "notebook>=7",
    "ipywidgets>=7.0.0",
    "jupyter_client>=8",
    "ipympl>=0.9.3",  # Needed for mpl compatibility (previous vers are only up to mpl 3.7)
]

[tool.black]
line-length = 100
target-version = ['py310']
exclude = '''
(
  /(
      \.git
    | \.direnv
    | \.eggs
    | \.nox
    | \.tox
    | \.venv
    | _build
    | build
    | dist
  )/
)
'''

[tool.isort]
profile = "black"
line_length = 100
py_version = 310
length_sort_sections = ["stdlib", "thirdparty", "firstparty", "localfolder"]
lines_between_sections = 1

[tool.pytest.ini_options]
minversion = "7.4"
addopts = "--doctest-modules --ignore=setup.py --ignore=docs/conf.py"
norecursedirs = ".* *.egg build docs/*"
filterwarnings = "error"

[tool.setuptools.dynamic]
version = {attr = "lumicks.pylake.__about__.__version__"}

[tool.setuptools.packages.find]
# Select the package(s) and data files to be included in the distribution.
# See https://setuptools.pypa.io/en/latest/userguide/package_discovery.html#custom-discovery
# Data files to be included (excluded) need to be selected in the file `MANIFEST.in`. Data files to
# be included in the wheel, need to be placed within the folder or a subfolder of the package(s) of
# the distribution.
include = ["lumicks*"]