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mlstrOpalr 1.0.3 (release : 2024-05-01)

Bug fixes and improvements

  • Some improvements in the documentation of the package has been made.
  • Due to update in madshapR package, the name of objects used in examples has been changed (madshapR_DEMO instead of DEMO_files)

mlstrOpalr 1.0.2

Creation of NEWS feed !!

Addition of NEWS.md for the development version use “(development version)”.

Bug fixes and improvements

  • Some improvements in the documentation of the package has been made.
  • New information in the taxonomy added (description of each fields)

mlstrOpalr 1.0.0

This package is a collection of wrapper functions used in data pipelines connected to an Opal environment. This ‘Opal’ client is specifically designed to interact with ‘Opal Maelstrom’ distributions to perform operations on the R server side. The user must have adequate credentials. Please see Obiba website for complete documentation.

This is still a work in progress, so please let us know if you used a function before and is not working any longer.

Helper functions

  • mlstrOpalr_help() Call the help center for full documentation

to connect to an Opal environment

  • opal_project_create() Create a project in an Opal environment

  • opal_files_pull(), opal_files_push() : Download/Upload files from/to an Opal environment.

  • opal_tables_pull(), opal_tables_push() : Download/Upload tables from/to an Opal project as a dossier.

  • taxonomy_opal_get() : Get available taxonomies in format used by Opal

  • taxonomy_opal_mlstr_get(): Get available taxonomies in format used by Maelstrom Research

  • data_dict_opalr_fix() Transform a data dictionary object from ‘opalr’ format to Opal format