From c9a0513d4724e49c5fa3135eadb86ecb62e2c19a Mon Sep 17 00:00:00 2001 From: jonbrenas Date: Tue, 12 Nov 2024 07:33:37 -0600 Subject: [PATCH] Removed all references to MyBinder --- docs/_config.yml | 1 - docs/af1/af1.0.ipynb | 2 +- docs/af1/af1.1.ipynb | 2 +- docs/af1/af1.2.ipynb | 2 +- docs/af1/af1.3.ipynb | 2 +- docs/af1/af1.4.ipynb | 2 +- docs/ag3/ag3.0.ipynb | 2 +- docs/ag3/ag3.1.ipynb | 2 +- docs/ag3/ag3.10.ipynb | 8 ++++---- docs/ag3/ag3.11.ipynb | 8 ++++---- docs/ag3/ag3.12.ipynb | 2 +- docs/ag3/ag3.13.ipynb | 2 +- docs/ag3/ag3.2.ipynb | 2 +- docs/ag3/ag3.3.ipynb | 2 +- docs/ag3/ag3.4.ipynb | 2 +- docs/ag3/ag3.5.ipynb | 2 +- docs/ag3/ag3.6.ipynb | 2 +- docs/ag3/ag3.7.ipynb | 2 +- docs/ag3/ag3.8.ipynb | 2 +- docs/ag3/ag3.9.ipynb | 8 ++++---- 20 files changed, 28 insertions(+), 29 deletions(-) diff --git a/docs/_config.yml b/docs/_config.yml index d98977f..9508e0f 100644 --- a/docs/_config.yml +++ b/docs/_config.yml @@ -11,7 +11,6 @@ repository: launch_buttons: notebook_interface: "jupyterlab" colab_url: "https://colab.research.google.com" - binderhub_url: "https://gke.mybinder.org" html: use_repository_button : true use_issues_button: true diff --git a/docs/af1/af1.0.ipynb b/docs/af1/af1.0.ipynb index f59a6a3..967db06 100644 --- a/docs/af1/af1.0.ipynb +++ b/docs/af1/af1.0.ipynb @@ -577,7 +577,7 @@ "\n", "Raw sequence reads, sequence read alignments and SNP calls are available for download from the European Nucleotide Archive (ENA). Further information on how to find and download these data is provided in the [data download guide](https://malariagen.github.io/vector-data/af1/download.html).\n", "\n", - "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](https://malariagen.github.io/vector-data/af1/cloud.html)." + "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](https://malariagen.github.io/vector-data/af1/cloud.html)." ] }, { diff --git a/docs/af1/af1.1.ipynb b/docs/af1/af1.1.ipynb index 67d3428..7139b56 100644 --- a/docs/af1/af1.1.ipynb +++ b/docs/af1/af1.1.ipynb @@ -81,7 +81,7 @@ "\n", "Data from `Af1.1` are hosted by several different services. \n", "\n", - "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." + "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." ] }, { diff --git a/docs/af1/af1.2.ipynb b/docs/af1/af1.2.ipynb index 5d5e298..40986e2 100644 --- a/docs/af1/af1.2.ipynb +++ b/docs/af1/af1.2.ipynb @@ -70,7 +70,7 @@ "\n", "Data from `Af1.2` are hosted by several different services. \n", "\n", - "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." + "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." ] }, { diff --git a/docs/af1/af1.3.ipynb b/docs/af1/af1.3.ipynb index 970d5d9..31cea97 100644 --- a/docs/af1/af1.3.ipynb +++ b/docs/af1/af1.3.ipynb @@ -66,7 +66,7 @@ "\n", "Data from `Af1.3` are hosted by several different services. \n", "\n", - "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." + "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." ] }, { diff --git a/docs/af1/af1.4.ipynb b/docs/af1/af1.4.ipynb index a7d1d77..531b091 100644 --- a/docs/af1/af1.4.ipynb +++ b/docs/af1/af1.4.ipynb @@ -70,7 +70,7 @@ "\n", "Data from `Af1.4` are hosted by several different services. \n", "\n", - "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." + "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." ] }, { diff --git a/docs/ag3/ag3.0.ipynb b/docs/ag3/ag3.0.ipynb index a0cb613..c578aec 100644 --- a/docs/ag3/ag3.0.ipynb +++ b/docs/ag3/ag3.0.ipynb @@ -81,7 +81,7 @@ "\n", "Raw sequence reads, sequence read alignments and SNP calls are available for download from the European Nucleotide Archive (ENA). Further information on how to find and download these data is provided in the [data download guide](download).\n", "\n", - "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." + "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." ] }, { diff --git a/docs/ag3/ag3.1.ipynb b/docs/ag3/ag3.1.ipynb index 0cdaeea..b60f85f 100644 --- a/docs/ag3/ag3.1.ipynb +++ b/docs/ag3/ag3.1.ipynb @@ -70,7 +70,7 @@ "\n", "Data from `Ag3.1` are hosted by several different services. \n", "\n", - "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." + "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." ] }, { diff --git a/docs/ag3/ag3.10.ipynb b/docs/ag3/ag3.10.ipynb index 282e28c..f6d3513 100644 --- a/docs/ag3/ag3.10.ipynb +++ b/docs/ag3/ag3.10.ipynb @@ -74,7 +74,7 @@ "\n", "Data from `Ag3.10` are hosted by several different services. \n", "\n", - "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." + "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." ] }, { @@ -1036,9 +1036,9 @@ "provenance": [] }, "kernelspec": { - "display_name": "developer-developer-training-nb-maintenance-mgen-9.0.0", + "display_name": "global-global-mgenv-6.0.5", "language": "python", - "name": "conda-env-developer-developer-training-nb-maintenance-mgen-9.0.0-py" + "name": "conda-env-global-global-mgenv-6.0.5-py" }, "language_info": { "codemirror_mode": { @@ -1050,7 +1050,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.10.11" + "version": "3.12.6" } }, "nbformat": 4, diff --git a/docs/ag3/ag3.11.ipynb b/docs/ag3/ag3.11.ipynb index cc53012..3fc4f62 100644 --- a/docs/ag3/ag3.11.ipynb +++ b/docs/ag3/ag3.11.ipynb @@ -70,7 +70,7 @@ "\n", "Data from `Ag3.11` are hosted by several different services. \n", "\n", - "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." + "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." ] }, { @@ -720,9 +720,9 @@ "provenance": [] }, "kernelspec": { - "display_name": "ahernank-ahernank-pug-dev", + "display_name": "global-global-mgenv-6.0.5", "language": "python", - "name": "conda-env-ahernank-ahernank-pug-dev-py" + "name": "conda-env-global-global-mgenv-6.0.5-py" }, "language_info": { "codemirror_mode": { @@ -734,7 +734,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.12.5" + "version": "3.12.6" } }, "nbformat": 4, diff --git a/docs/ag3/ag3.12.ipynb b/docs/ag3/ag3.12.ipynb index 6ddf3c8..e808741 100644 --- a/docs/ag3/ag3.12.ipynb +++ b/docs/ag3/ag3.12.ipynb @@ -69,7 +69,7 @@ "\n", "Data from `Ag3.12` are hosted by several different services. \n", "\n", - "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." + "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." ] }, { diff --git a/docs/ag3/ag3.13.ipynb b/docs/ag3/ag3.13.ipynb index 36028cf..322c180 100644 --- a/docs/ag3/ag3.13.ipynb +++ b/docs/ag3/ag3.13.ipynb @@ -69,7 +69,7 @@ "\n", "Data from `Ag3.13` are hosted by several different services. \n", "\n", - "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." + "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." ] }, { diff --git a/docs/ag3/ag3.2.ipynb b/docs/ag3/ag3.2.ipynb index 8e16c19..45f29e4 100644 --- a/docs/ag3/ag3.2.ipynb +++ b/docs/ag3/ag3.2.ipynb @@ -80,7 +80,7 @@ "\n", "Data from `Ag3.2` are hosted by several different services. \n", "\n", - "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." + "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." ] }, { diff --git a/docs/ag3/ag3.3.ipynb b/docs/ag3/ag3.3.ipynb index f1d4d0e..3f5a183 100644 --- a/docs/ag3/ag3.3.ipynb +++ b/docs/ag3/ag3.3.ipynb @@ -73,7 +73,7 @@ "\n", "Data from `Ag3.3` are hosted by several different services. \n", "\n", - "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." + "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." ] }, { diff --git a/docs/ag3/ag3.4.ipynb b/docs/ag3/ag3.4.ipynb index 9dec7bf..b114fc2 100644 --- a/docs/ag3/ag3.4.ipynb +++ b/docs/ag3/ag3.4.ipynb @@ -70,7 +70,7 @@ "\n", "Data from `Ag3.4` are hosted by several different services. \n", "\n", - "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." + "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." ] }, { diff --git a/docs/ag3/ag3.5.ipynb b/docs/ag3/ag3.5.ipynb index 5755b2c..f8235a6 100644 --- a/docs/ag3/ag3.5.ipynb +++ b/docs/ag3/ag3.5.ipynb @@ -71,7 +71,7 @@ "\n", "Data from `Ag3.5` are hosted by several different services. \n", "\n", - "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." + "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." ] }, { diff --git a/docs/ag3/ag3.6.ipynb b/docs/ag3/ag3.6.ipynb index 6ffaedc..7c3c5f1 100644 --- a/docs/ag3/ag3.6.ipynb +++ b/docs/ag3/ag3.6.ipynb @@ -72,7 +72,7 @@ "\n", "Data from `Ag3.6` are hosted by several different services. \n", "\n", - "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." + "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." ] }, { diff --git a/docs/ag3/ag3.7.ipynb b/docs/ag3/ag3.7.ipynb index 47c8194..deea6e1 100644 --- a/docs/ag3/ag3.7.ipynb +++ b/docs/ag3/ag3.7.ipynb @@ -75,7 +75,7 @@ "\n", "Data from `Ag3.7` are hosted by several different services. \n", "\n", - "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." + "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." ] }, { diff --git a/docs/ag3/ag3.8.ipynb b/docs/ag3/ag3.8.ipynb index 74d0aea..7ae240d 100644 --- a/docs/ag3/ag3.8.ipynb +++ b/docs/ag3/ag3.8.ipynb @@ -75,7 +75,7 @@ "\n", "Data from `Ag3.8` are hosted by several different services. \n", "\n", - "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." + "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." ] }, { diff --git a/docs/ag3/ag3.9.ipynb b/docs/ag3/ag3.9.ipynb index 13078cb..fa19360 100644 --- a/docs/ag3/ag3.9.ipynb +++ b/docs/ag3/ag3.9.ipynb @@ -79,7 +79,7 @@ "\n", "Data from `Ag3.9` are hosted by several different services. \n", "\n", - "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." + "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)." ] }, { @@ -1507,9 +1507,9 @@ "provenance": [] }, "kernelspec": { - "display_name": "developer-developer-training-nb-maintenance-mgen-8.7.0", + "display_name": "global-global-mgenv-6.0.5", "language": "python", - "name": "conda-env-developer-developer-training-nb-maintenance-mgen-8.7.0-py" + "name": "conda-env-global-global-mgenv-6.0.5-py" }, "language_info": { "codemirror_mode": { @@ -1521,7 +1521,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.10.11" + "version": "3.12.6" } }, "nbformat": 4,