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Implementation

MyToSex infers the sex of some bivalves species based on the mitochondrial genomes content. It is distributed under MIT license and its code is freely available in this repository and can be installed as follows:

conda create --yes --name mytosex_env
conda install --yes --name mytosex_env --channel channel_name mythosex [...] 

MyToSex can be used as follows:

python mytosex.py settings.yaml

Settings description

The different options to use in the analysis can be passed to MyToSex using a yaml. This file can ben splited in five different blocks of information:

1. Resources:
2. Output directory:
3. Mitotypes of references:
4. Samples reads:
5. Other species mitogenomes: