From e0cd06c2bbdaee5460573c2cb09dd7c0aa87d4ce Mon Sep 17 00:00:00 2001 From: souzadevinicius Date: Thu, 21 Nov 2024 14:39:52 +0000 Subject: [PATCH] Adding mapping-data --- data/mapping-data.json | 94 ++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 94 insertions(+) create mode 100644 data/mapping-data.json diff --git a/data/mapping-data.json b/data/mapping-data.json new file mode 100644 index 0000000..23a10dc --- /dev/null +++ b/data/mapping-data.json @@ -0,0 +1,94 @@ +{ + "creator_id": "MONDO:8000015", + "homepage": "https://github.com/monarch-initiative/monarch-mapping-commons", + "license": "https://creativecommons.org/publicdomain/zero/1.0/", + "local_name": "mondo_hp_lexical.sssom.tsv", + "mapping_provider": "https://monarchinitiative.org/", + "mapping_registry_description": "A collection of the SSSOM-format mappings used for the Monarch Initiative knowledge graph", + "mapping_registry_id": "https://w3id.org/sssom/commons/monarch", + "mapping_registry_title": "Monarch Mapping Commons", + "mapping_set_confidence": "0.8", + "mapping_set_description": "", + "mapping_set_group": "disease_mappings", + "mapping_set_id": "https://raw.githubusercontent.com/mapping-commons/disease-mappings/refs/heads/main/mappings/mondo_hp_lexical.sssom.tsv", + "mapping_set_references": [ + { + "local_name": "mondo.sssom.tsv", + "mapping_set_confidence": "0.99", + "mapping_set_group": "disease_mappings", + "mapping_set_id": "http://purl.obolibrary.org/obo/mondo/mappings/mondo.sssom.tsv", + "other": { + "local_id": "mondo" + } + }, + { + "local_name": "mesh_chebi_biomappings.sssom.tsv", + "mapping_set_confidence": "0.9", + "mapping_set_group": "chemical_mappings", + "mapping_set_id": "http://w3id.org/sssom/commons/monarch/mesh_chebi_biomappings.sssom.tsv", + "mirror_from": "https://raw.githubusercontent.com/biopragmatics/biomappings/master/docs/_data/sssom/biomappings.sssom.tsv" + }, + { + "local_name": "gene_mappings.sssom.tsv", + "mapping_set_confidence": "0.9", + "mapping_set_group": "gene_mappings", + "mapping_set_id": "http://w3id.org/sssom/commons/monarch/gene_mappings.sssom.tsv", + "mirror_from": "https://data.monarchinitiative.org/monarch-gene-mapping/latest/gene_mappings.sssom.tsv" + }, + { + "local_name": "hp_mesh.sssom.tsv", + "mapping_set_confidence": "0.9", + "mapping_set_group": "phenotype", + "mapping_set_id": "http://w3id.org/sssom/commons/monarch/hp_mesh.sssom.tsv", + "mirror_from": "https://raw.githubusercontent.com/monarch-initiative/umls-ingest/main/src/umls_ingest/mappings/hp_mesh.sssom.tsv" + }, + { + "local_name": "umls_hp.sssom.tsv", + "mapping_set_confidence": "0.9", + "mapping_set_group": "phenotype", + "mapping_set_id": "http://w3id.org/sssom/commons/monarch/umls_hp.sssom.tsv", + "mirror_from": "https://raw.githubusercontent.com/monarch-initiative/umls-ingest/main/src/umls_ingest/mappings/umls_hp.sssom.tsv" + }, + { + "local_name": "upheno-cross-species.sssom.tsv", + "mapping_set_confidence": "1", + "mapping_set_group": "phenotype", + "mapping_set_id": "http://w3id.org/sssom/commons/monarch/upheno-cross-species.sssom.tsv", + "mirror_from": "https://raw.githubusercontent.com/obophenotype/upheno-dev/refs/heads/master/src/mappings/upheno-cross-species.sssom.tsv" + }, + { + "local_name": "upheno-species-independent.sssom.tsv", + "mapping_set_confidence": "1", + "mapping_set_group": "phenotype", + "mapping_set_id": "http://w3id.org/sssom/commons/monarch/upheno-species-independent.sssom.tsv", + "mirror_from": "https://raw.githubusercontent.com/obophenotype/upheno-dev/refs/heads/master/src/mappings/upheno-species-independent.sssom.tsv" + }, + { + "local_name": "uberon.sssom.tsv", + "mapping_set_confidence": "1", + "mapping_set_group": "phenotype", + "mapping_set_id": "http://w3id.org/sssom/commons/monarch/uberon.sssom.tsv", + "mirror_from": "https://raw.githubusercontent.com/obophenotype/upheno-dev/refs/heads/master/src/mappings/uberon.sssom.tsv" + }, + { + "local_name": "nbo-go.sssom.tsv", + "mapping_set_confidence": "1", + "mapping_set_group": "phenotype", + "mapping_set_id": "http://w3id.org/sssom/commons/monarch/nbo-go.sssom.tsv", + "mirror_from": "https://raw.githubusercontent.com/obophenotype/upheno-dev/refs/heads/master/src/mappings/nbo-go.sssom.tsv" + }, + { + "local_name": "mondo_hasdbxref_hp.sssom.tsv", + "mapping_set_confidence": "0.9", + "mapping_set_group": "disease_mappings", + "mapping_set_id": "http://purl.obolibrary.org/obo/mondo/mappings/mondo_hasdbxref_hp.sssom.tsv" + }, + { + "local_name": "mondo_hp_lexical.sssom.tsv", + "mapping_set_confidence": "0.8", + "mapping_set_group": "disease_mappings", + "mapping_set_id": "https://raw.githubusercontent.com/mapping-commons/disease-mappings/refs/heads/main/mappings/mondo_hp_lexical.sssom.tsv" + } + ], + "mappings": [] +} \ No newline at end of file