instructions_data_analysis_figS1.txt

#Run all the following commands from within "Scripts" directory, unless stated otherwise

## Run the following commands from RStudio Console:
source("diffBUM_HMM_35S_dataset_mismatch_rate.R")
source("diffBUM_HMM_Xist_dataset_mismatch_rate.R")

##Run the following commands from terminal, from within "diff_BUM_HMM/Jupyter_notebooks/Supplementary_Figure_1" directory:
python script_comparison_perturbations_Xist_dataset.py > output_Xist_150_permutations.txt
python script_comparison_perturbations_35S_dataset.py > output_35S_150_permutations.txt