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ssDNA Tutorial: Broken Link #223
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enhancement
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parameter submission
flag for submitting new parameters to the Martini polymer library
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I think that is a good idea. Do you feel up for giving it a try to implement these parameters or shall I? Also the polyply regression tests has the force-field files as a copy so for now we can fix the link |
fgrunewald
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flag for submitting new parameters to the Martini polymer library
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May 30, 2022
For now I fixed the link but again implementing this recommended FF is good practice anyways |
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Labels
enhancement
New feature or request
parameter submission
flag for submitting new parameters to the Martini polymer library
As the name suggest, there is a broken link in the Single stranded circular DNA tutorial. We use the
amber14-parmbsc1
force field, which are no long online available from "official" sources due to theGROMACS Force Fields: User contributions
web-page being offline. The broken link makes it difficult for users to complete the tutorial.A possible solution would be supporting the
amber14sb-OL15
force field. TheOL15
version is recommended by the amber developers for DNA simulations and a GROMACS port is provided by the authors here.Cheers, Jan
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