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Add ModelCollection class #120

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jgallowa07 opened this issue Aug 15, 2023 · 1 comment
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Add ModelCollection class #120

jgallowa07 opened this issue Aug 15, 2023 · 1 comment
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enhancement New feature or request

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@jgallowa07
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jgallowa07 commented Aug 15, 2023

@jbloom related to our conversation last Monday.

Because fitting a collection of models is important for hyper-parameter tuning (in particular lasso strength coeff $\lambda$), we should offer class that can store multiple fits, and can produce plots (altair for tracing certain muts?) like the shrinkage and sparsity, loss, and potentially correlation.

shrinkage_analysis_trace_plots_beta

Note: a bunch of useful code for merging parameters and plotting exist in the spike analysis.

In addition to the dms vep pipeline I'm imagining a more standalone pipeline for multidms, so hopefully we can parallel-ize these fits using those. @sminot might have a great platform for hosting both such pipelines

@jgallowa07 jgallowa07 added the enhancement New feature or request label Aug 15, 2023
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Closed with #122

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