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[Request] looping inputs for multiple ChIP-seq comparisons #1013
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Hi, name[\t]condition[\t]group In this example, the sample sheet would be split into two groups, each containing 2 control and 2 treatment samples, and two instances of differential binding analysis would be run. Also, you have the option to use the same control for all treatment samples: in that case you can set the "group" column value for these samples to "All". Hope this helps, Katarzyna |
If my samplSheet has more than 2 conditions CSAW fails.
Is it possible to split the samples by condition so that CSAW will do a one to one comparison?
example of sampleSheet:
Genrich nicely creates a narrowPeak using the noted ShIP files and the provided Input/IGG files.
Thank you.
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