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difference in conda env hashes between snakePipes and snakemake #914

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katsikora opened this issue Aug 9, 2023 · 1 comment
Open

difference in conda env hashes between snakePipes and snakemake #914

katsikora opened this issue Aug 9, 2023 · 1 comment
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@katsikora
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For rna_seq.yaml:
name: snakepipes_RNAseq_environment_2.0
channels:

  • conda-forge
  • bioconda
    dependencies:

- python >= 3

  • bedtools = 2.30.0
  • samtools = 1.15.1
  • subread = 2.0.1
  • hisat2 = 2.2.1
  • star = 2.7.10b
  • salmon = 1.10.1
  • r-base = 4.1.3
  • r-wasabi
  • r-dplyr
  • r-ggplot2
  • r-pheatmap
  • r-rmarkdown
  • r-knitr
  • pandoc
  • r-dt
  • r-rcolorbrewer
  • bioconductor-deseq2
  • bioconductor-tximport
  • r-knitcitations
  • bioconductor-apeglm
  • tbb

- rmats = 4.1.0

snakemake calculates the hash 29176e8931ebf4e5c530cdaeeea4c2b4_, while snakePipes createEnvs 1894f9150863005367d36e19714f936e .
@katsikora
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snakemake version 7.18.2

@katsikora katsikora mentioned this issue Aug 17, 2023
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@katsikora