v8.0.0

Changelog

🚀 Major changes

• Refactor add cds imaging (#147)
• 10X Visium model integration (#135)

✨ Enhancements

• October CCKP release - term updates (#150)

Contributors

@Bankso, @aditigopalan and mc2center-bot[bot]

v7.1.0

Changelog

• [minor] Toolview attribute update (#129)

Contributors

@Bankso, @aditigopalan and mc2center-bot[bot]

v7.0.0

What's Changed

• [schema] New tool schema update by @aditigopalan in #122
• [patch] Multispecies fix for 6.0.1 by @Bankso in #119
• [docs] Docs update by @Bankso in #124
• [feat] Add FileView, Study, and terms for light sheet microscopy dataset by @Bankso in #123
• [bug fix] Update file.md by @Bankso in #126

Full Changelog: v6.0.0...v7.0.0

v6.0.0

What's Changed

• [docs] Refine docs site by @vpchung in #91
• [docs] update README by @vpchung in #94
• [docs] Add contributing guidelines to docs site by @vpchung in #95
• [fix] Typos fix by @vpchung in #96
• [docs] Update docs and fix typos by @vpchung in #98
• [docs]: Update landing page of the docs site by @vpchung in #100
• [chore]: Update update_valid_values.py script by @vpchung in #105
• [fix] table rendering for "All Terms" table by @vpchung in #113
• Sharing plan issue 106 by @Bankso in #110
• [addition] Add "Multispecies" as a valid value to dataset Species by @aditigopalan

Full Changelog: v5.1.2...v6.0.0

v5.1.2

Changelog

🐛 Bug fixes

• Geomx fixes (#88)

Contributors

@Bankso and @vpchung

v5.1.1

What's Changed

• Update README.md by @aditigopalan in #60
• [fix] "Build jsonld" GH action by @vpchung in #64
• feat: add initial docs site by @vpchung in #66
• Schematic refactor and model updates issue 61 by @Bankso in #70

Full Changelog: v4.1.0...v5.1.1

v4.1.0

Date	Author	Category	Action
1/2024	@aditigopalan	Grant Institution Name	Add: 'Northeastern University'
1/2024	@aditigopalan	Grant Institution Alias	Add: 'NEU'
12/2023	@aditigopalan	GrantView	Add: Grant Synapse Team, Grant Synapse Project
1/2024	@vpchung	.github	Add: repo templates
1/2024	@Bankso	modules	Add: Geomx updates
1/2024	@Bankso	dca_config	Add: dca-template-confic.json
1/2024	@Bankso	templates	Add: Dataset View, Educational Resource, Publication View, Tool View, Biospecimen, NanoString GeoMx DSP Level 1, NanoString GeoMx DSP Level 2, NanoString GeoMx DSP Level 3, NanoString GeoMX ROI Segment Annotation, NanoString GeoMx DSP Imaging Level 2

Full Changelog: v23.2.1...v4.1.0

v4.0.0

This release contains changes, logged as follows:

Date	Author	Category	Action
12/2023	@aditigopalan	GrantView	Add: 'Grant Start Date', 'NIH RePORTER Link', 'Duration of Funding', 'Embargo End Date' as attributes
12/2023	@aditigopalan	Grant Number	Add: 'CA280984', 'CA280849', 'CA280829', 'CA284090', 'CA284086', 'CA274504', 'CA283114', 'CA274507', 'CA274506', 'CA274511', 'CA282451'
12/2023	@aditigopalan	Grant Institution Name	Add: 'Washington University in St. Louis'
12/2023	@aditigopalan	Grant Institution Alias	Add: 'WUSTL'
09/2023	@aditigopalan	assay	Add: 'Alcian Blue Staining Method', 'Artificial Intelligence', 'Cell Culture', 'Clinical Study', 'Cell-free Circulating Tumor DNA Assay', 'Co-Immunoprecipitation Mass Spectrometry', 'Deep Learning', 'Fluorescent In Situ Sequencing', 'Gene Ontology Enrichment Analysis', 'Gene Set Enrichment Analysis', 'Gene Silencing', 'Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture', 'Imaging Mass Cytometry', 'Immunofluorescent Staining Method', 'Immunotherapy', 'Viral Transduction', 'Metastatic Colonization Assay', 'Phylogenetic Analysis', 'Picrosirius Staining', 'Scratch Assay', 'Structural Variant Analysis', 'Survival Analysis', 'Targeted Error Correction Sequencing'
09/2023	@aditigopalan	assay	Add: 'Not-Applicable', 'Plexiform Neurofibroma'
11/2023	@Bankso	modules	Add: Initial versions of Biospecimen, GeoMX Level 1 -3, and GeoMX Imaging models

Full change log: v3.0.0...v4.0.0

v3.0.0

New Features

• Add component id attributes to "View" type manifests for use with schematic "upsert" table operation by @Bankso in #19

Full Changelog: v2.0.0...v3.0.0

v2.0.0

Date	Author	Category	Action
06/2023	@Bankso (OB)	assay	Add: '10x Multiome', 'Visium Spatial Gene Expression', 'Antitumor Drug Screening Assay', 'Bioelectrochemical Analysis', 'Chimeric Antigen Receptor T-Cell Therapy', 'Cell Cycle Assay', 'Clonality Analysis', 'Comparative Genomic Hybridization', 'Cryo-Electron Microscopy', 'Cryo-Electron Tomography', 'Data Integration', 'Field-Emission Scanning Electron Microscopy', 'Label-free Protein Quantification by LC/MS', 'Metabolite Profiling Assay', 'Reporter Gene Assay', 'Single-Molecule Localization Microscopy', 'Synthesis', 'Targeted Therapy Agent', 'Trichrome Staining Method', 'Ultrasound Imaging'
06/2023	OB	assay	Remove 'Clinical Trial'
06/2023	OB	tissue	Add: 'Cancer-Associated Fibroblast', 'Peripheral Blood Mononuclear Cell'
06/2023	OB	dataset_file_format	Add: 'MGF', 'BIGWIG', 'H5AD', 'H5', 'SF', 'PKL', 'Unspecified', 'Pending Annotation'
06/2023	OB	tool_format	Add: 'PDB', 'HED', 'MRC', 'Unspecified'

New Features

• Data model added for 'Education Resources' (modules/education)

Full Changelog: v1.1.0...v2.0.0