pyproject.toml

[tool.poetry]
name = "mccoy"
version = "0.1.2"
description = ""
authors = ["Wytamma Wirth <wytamma.wirth@me.com>", "Simon Mutch <smutch@unimelb.edu.au>", "Rob Turnbull <robert.turnbull@unimelb.edu.au>"]
readme = "README.md"
exclude = ["resources/"]

[tool.poetry.scripts]
mccoy = "mccoy.main:app"

[tool.poetry.dependencies]
python = ">=3.7,<4.0"
typer = "^0.4.1"
snakemake = "^7.18.2"
tqdm = "^4.64.0"
setuptools = "^63.4.1"
Jinja2 = "^3.1.2"

[tool.poetry.dev-dependencies]
pytest = "^6.0"
DendroPy = "^4.5.2"
Sphinx = ">=5.0.0,<6.0.0"
sphinx-immaterial = "^0.8.0"
snakedoc = "^0.1.1"
sphinxcontrib-mermaid = "^0.7.1"

[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"

[tool.black]
line-length = 120
skip_string_normalization = true

[tool.isort]
profile = "black"

[tool.pylint.messages_control]
disable = "C0330, C0326"

[tool.pylint.format]
max-line-length = "120"

[tool.snakefmt]
line_length = 120
include = '\.smk$|^Snakefile$'

[tool.pytest]
minversion = "6.0"
testpaths = [".tests"]