book.bib

@comment{
  Entries currently used in book.
  Special characters *MUST* use LaTeX escapes, because BibTeX doesn't handle UTF-8 properly.
}

@inproceedings{Alme2017,
  author = {Daniel A. Almeida and Gail C. Murphy and Greg Wilson and Mike Hoye},
  title = {{Do Software Developers Understand Open Source Licenses?}},
  booktitle = {Proceedings of the 25th International Conference on Program Comprehension},
  year = {2017},
  isbn = {9781-538-6053-5-6},
  pages = {1--11},
  url = {https://doi.org/10.1109/ICPC.2017.7},
  doi = {10.1109/ICPC.2017.7},
  publisher = {{IEEE} Press},
  note = {Found that developers understand single licenses well, but frequently misunderstand the interactions between multiple licenses.}
}

@book{Auro2018,
  author = {Valerie Aurora and Mary Gardiner},
  title = {{How to Respond to Code of Conduct Reports}},
  publisher = {Frame Shift Consulting LLC},
  year = {2018},
  link = {https://frameshiftconsulting.com/code-of-conduct-book/},
  isbn = {9781386922575},
  note = {A practical step-by-step guide to handling code of conduct issues.}
}

@inproceedings{Bacc2013,
  author = {Alberto Bacchelli and Christian Bird},
  title = {{Expectations, Outcomes, and Challenges of Modern Code Review}},
  booktitle = {Proc.\ International Conference on Software Engineering},
  month = {May},
  year = {2013},
  url = {http://research.microsoft.com/apps/pubs/default.aspx?id=180283},
  note = {Summarizes more than thirty years of research on the benefits of code review.}
}

@article{Beck2016,
  author = {Brett A. Becker and Graham Glanville and Ricardo Iwashima and Claire McDonnell and Kyle Goslin and Catherine Mooney},
  title = {{Effective Compiler Error Message Enhancement for Novice Programming Students}},
  journal = {Computer Science Education},
  volume = {26},
  number = {2-3},
  pages = {148--175},
  year = {2016},
  month = {Jul},
  publisher = {Informa {UK} Limited},
  doi = {10.1080/08993408.2016.1225464},
  link = {https://doi.org/10.1080/08993408.2016.1225464},
  note = {Reports that improved error messages helped novices learn faster.}
}

@inproceedings{Beni2017,
  author = {Gal Beniamini and Sarah Gingichashvili and Alon Klein Orbach and Dror G. Feitelson},
  title = {{Meaningful Identifier Names: The Case of Single-Letter Variables}},
  booktitle = {Proc.\ 2017 International Conference on Program Comprehension ({ICPC'17})},
  year = {2017},
  month = {May},
  publisher = {{Institute of Electrical and Electronics Engineers (IEEE)}},
  doi = {10.1109/icpc.2017.18},
  link = {https://doi.org/10.1109/icpc.2017.18},
  note = {Reports that use of single-letter variable names doesn't affect ability to modify code, and that some single-letter variable names have implicit types and meanings.}
}

@misc{Bern2018,
  author = {Gary Bernhardt},
  title = {{A Case Study in Not Being a Jerk in Open Source}},
  url = {https://www.destroyallsoftware.com/blog/2018/a-case-study-in-not-being-a-jerk-in-open-source},
  year = {2018},
  note = {Rewrites a typically abusive message by Linus Torvalds to be less repellant.}
}

@inproceedings{Bett2008,
  author = {Nicolas Bettenburg and Sascha Just and Adrian Schr\"{o}ter and Cathrin Weiss and Rahul Premraj and Thomas Zimmermann},
  title = {{What Makes a Good Bug Report?}},
  booktitle = {Proc.\ 16th {ACM} {SIGSOFT} International Symposium on Foundations of Software Engineering - ({SIGSOFT}'08/{FSE}'16)},
  year = {2008},
  publisher = {{ACM} Press},
  doi = {10.1145/1453101.1453146},
  note = {Reports a survey of developers on what makes for a good bug report.}
}

@article{Bink2012,
  author = {Dave Binkley and Marcia Davis and Dawn Lawrie and Jonathan I. Maletic and Christopher Morrell and Bonita Sharif},
  title = {{The Impact of Identifier Style on Effort and Comprehension}},
  journal = {Empirical Software Engineering},
  volume = {18},
  number = {2},
  pages = {219--276},
  year = {2012},
  month = {May},
  publisher = {Springer Nature},
  doi = {10.1007/s10664-012-9201-4},
  link = {https://doi.org/10.1007/s10664-012-9201-4},
  note = {Reports that reading and understanding code is fundamentally different from reading prose, and that experienced developers are relatively unaffected by identifier style, but beginners benefit from the use of camel case (versus pothole case).}
}

@book{Boll2014,
  author = {David Bollier},
  title = {{Think Like a Commoner: A Short Introduction to the Life of the Commons}},
  year = {2014},
  publisher = {New Society Publishers},
  isbn = {0865717680},
  link = {https://isbndb.com/book/0865717680},
  note = {A short introduction to a widely-used model of governance.}
}

@misc{Borw2013,
  author = {Jonathan Borwein and David H. Bailey},
  title = {{The Reinhart-Rogoff Error---Or, How not to Excel at Economics}},
  url = {https://theconversation.com/the-reinhart-rogoff-error-or-how-not-to-excel-at-economics-13646},
  year = {2013},
  note = {Summarizes the now-infamous Reinhart--Rogoff spreadsheet.}
}

@misc{Brai2018,
  author = {Houssem Ben Braiek and Foutse Khomh},
  title = {{On Testing Machine Learning Programs}},
  year = {2018},
  url = {https://arxiv.org/abs/1812.02257},
  note = {Looks at how developers (don't) test machine learning programs.}
}

@book{Bran1995,
  author = {Stewart Brand},
  title = {{How Buildings Learn: What Happens after They're Built}},
  publisher = {Penguin USA},
  year = {1995},
  isbn = {0140139966},
  note = {How buildings evolve and adapt to meet the needs of those who live in them.}
}

@misc{Broc2019,
  author = {Jon Brock},
  year = {2019},
  title = {{`A Love Letter to Your Future Self': What Scientists Need to Know about {FAIR} Data}},
  url = {https://www.natureindex.com/news-blog/what-scientists-need-to-know-about-fair-data},
  note = {Accessed November 2019}
}

@book{Broo2016,
  author = {Stephen D. Brookfield and Stephen Preskill},
  title = {{The Discussion Book: 50 Great Ways to Get People Talking}},
  publisher = {Jossey-Bass},
  year = {2016},
  isbn = {978-1119049715},
  note = {Describes fifty different ways to get groups talking productively.}
}

@article{Brow2018,
  author = {Neil C.C. Brown and Greg Wilson},
  doi = {10.1371/journal.pcbi.1006023},
  url = {https://doi.org/10.1371/journal.pcbi.1006023},
  year = {2018},
  month = {Apr},
  publisher = {{PLoS}},
  volume = {14},
  number = {4},
  pages = {e1006023},
  title = {{Ten Quick Tips for Teaching Programming}},
  journal = {{PLOS} Computational Biology}
}

@misc{Brow2017,
  author = {Titus Brown},
  title = {{How I Learned to Stop Worrying and Love the Coming Archivability Crisis in Scientific Software}},
  url = {http://ivory.idyll.org/blog/tag/futurepaper.html},
  year = {2017}
}

@incollection{Buck1995,
  author = {Jonathan B. Buckheit and David L. Donoho},
  title = {{WaveLab and Reproducible Research}},
  booktitle = {Wavelets and Statistics},
  publisher = {Springer New York},
  year = {1995},
  pages = {55--81},
  doi = {10.1007/978-1-4612-2544-7_5},
  note = {An early and influential discussion of reproducible research.}
}

@article{Carr2014,
  author = {John Carroll},
  title = {{Creating Minimalist Instruction}},
  journal = {International Journal of Designs for Learning},
  volume = {5},
  number = {2},
  year = {2014},
  pages = {56-65},
  month = {Nov},
  publisher = {IUScholarWorks},
  doi = {10.14434/ijdl.v5i2.12887},
  link = {https://doi.org/10.14434/ijdl.v5i2.12887},
  note = {A look back on the author's work on minimalist instruction.}
}

@misc{Caul2016,
  author = {Mike Caulfield},
  year = {2016},
  title = {{Choral Explanations}},
  url = {https://hapgood.us/2016/05/13/choral-explanations/}
}

@incollection{Cohe2010,
  author = {Jason Cohen},
  title = {{Modern Code Review}},
  booktitle = {Making Software},
  editor = {Andy Oram and Greg Wilson},
  publisher = {O'Reilly},
  year = {2010},
  isbn = {978-0596808327},
  note = {Lessons from one of the largest studies of code review ever done.}
}

@article{Deve2018,
  doi = {10.1371/journal.pcbi.1005963},
  link = {https://doi.org/10.1371/journal.pcbi.1005963},
  year = {2018},
  month = {Mar},
  publisher = {{PLoS}},
  volume = {14},
  number = {3},
  pages = {e1005963},
  author = {Gabriel A. Devenyi and Rémi Emonet and Rayna M. Harris and Kate L. Hertweck and Damien Irving and Ian Milligan and Greg Wilson},
  title = {{Ten Simple Rules for Collaborative Lesson Development}},
  journal = {{PLOS} Computational Biology}
}

@article{Dobz1973,
  author = {Theodosius Dobzhansky},
  title = {{Nothing in Biology Makes Sense Except in the Light of Evolution}},
  journal = {The American Biology Teacher},
  year = {1973},
  volume = {35},
  number = {3},
  month = {Mar},
  pages = {125–129},
  doi = {10.2307/4444260},
  publisher = {University of California Press},
  note = {A forceful statement of the central unifying theme of modern biology.}
}

@article{Faga1976,
  author = {Michael E. Fagan},
  title = {{Design and Code Inspections to Reduce Errors in Program Development}},
  journal = {IBM Systems Journal},
  volume = {15},
  number = {3},
  pages = {182-211},
  year = {1976},
  doi = {10.1147/sj.153.0182},
  note = {An early and influential study of code review.}
}

@article{Faga1986,
  author = {Michael E. Fagan},
  title = {{Advances in Software Inspections}},
  journal = {IEEE Transactions on Software Engineering},
  volume = {12},
  number = {7},
  pages = {744-751},
  month = {Jul},
  year = {1986},
  doi = {10.1109/TSE.1986.6312976},
  note = {Summarizes the author's early work on the benefits of code review.}
}

@book{Foge2005,
  author = {Karl Fogel},
  title = {{Producing Open Source Software: How to Run a Successful Free Software Project}},
  year = {2005},
  publisher = {O'Reilly Media},
  isbn = {0596007590},
  link = {http://producingoss.com/},
  note = {The definite guide to managing open source software development projects.}
}

@article{Free1972,
  author = {Jo Freeman},
  title = {{The Tyranny of Structurelessness}},
  journal = {The Second Wave},
  volume = {2},
  number = {1},
  pages = {20-33},
  year = {1972},
  link = {https://www.jofreeman.com/joreen/tyranny.htm},
  note = {Points out that every organization has a power structure: the only question is whether it's accountable or not.}
}

@inproceedings{Fucc2016,
  author = {Davide Fucci and Giuseppe Scanniello and Simone Romano and Martin Shepperd and Boyce Sigweni and Fernando Uyaguari and Burak Turhan and Natalia Juristo and Markku Oivo},
  title = {{An External Replication on the Effects of Test-driven Development Using a Multi-site Blind Analysis Approach}},
  booktitle = {Proc.\ 10th {ACM}/{IEEE} International Symposium on Empirical Software Engineering and Measurement ({ESEM'16})},
  year = {2016},
  publisher = {{ACM} Press},
  doi = {10.1145/2961111.2962592},
  link = {https://doi.org/10.1145/2961111.2962592},
  note = {The latest in a long line of studies to find that test-driven development (TDD) has little or no impact on development time or code quality.}
}

@article{Fucc2017,
  author = {Davide Fucci and Hakan Erdogmus and Burak Turhan and Markku Oivo and Natalia Juristo},
  title = {{A Dissection of the Test-Driven Development Process: Does It Really Matter to Test-First or to Test-Last?}},
  journal = {{IEEE} Transactions on Software Engineering},
  volume = {43},
  number = {7},
  month = {Jul},
  year = {2017},
  doi = {10.1109/tse.2016.2616877},
  pages = {597-614},
  note = {An evidence-based look at whether writing tests first produces better code faster.}
}

@article{Gil2016,
  author = {Yolanda Gil and C{\'{e}}dric H. David and Ibrahim Demir and Bakinam T. Essawy and Robinson W. Fulweiler and Jonathan L. Goodall and Leif Karlstrom and Huikyo Lee and Heath J. Mills and Ji-Hyun Oh and Suzanne A. Pierce and Allen Pope and Mimi W. Tzeng and Sandra R. Villamizar and Xuan Yu},
  doi = {10.1002/2015EA000136},
  journal = {Earth and Space Science},
  pages = {388-415},
  title = {{Toward the Geoscience Paper of the Future: Best Practices for Documenting and Sharing Research from Data to Software to Provenance}},
  volume = {3},
  number = {10},
  year = {2016}
}

@article{Gold1991,
  author = {David Goldberg},
  title = {{What Every Computer Scientist Should Know about Floating-Point Arithmetic}},
  journal = {{ACM} Computing Surveys},
  year = {1991},
  month = {Mar},
  publisher = {Association for Computing Machinery ({ACM})},
  volume = {23},
  number = {1},
  pages = {5-48},
  doi = {10.1145/103162.103163},
  link = {https://doi.org/10.1145/103162.103163},
  note = {A detailed but accessible explanation of how computer arithmetic actually works.}
}

@article{Good2014,
  author = {Alyssa Goodman and Alberto Pepe and Alexander W. Blocker and Christine L. Borgman and Kyle Cranmer and Merce Crosas and Rosanne Di Stefano and Yolanda Gil and Paul Groth and Margaret Hedstrom and David W. Hogg and Vinay Kashyap and Ashish Mahabal and Aneta Siemiginowska and Aleksandra Slavkovic},
  doi = {10.1371/journal.pcbi.1003542},
  url = {https://doi.org/10.1371/journal.pcbi.1003542},
  year = {2014},
  month = {Apr},
  publisher = {Public Library of Science ({PLoS})},
  volume = {10},
  number = {4},
  pages = {e1003542},
  title = {{Ten Simple Rules for the Care and Feeding of Scientific Data}},
  journal = {{PLoS} Computational Biology}
}

@book{Goyv2012,
  author = {Jan Goyvaerts and Steven Levithan},
  title = {{Regular Expressions Cookbook}},
  edition = {2nd},
  publisher = {O'Reilly Media},
  year = {2012},
  isbn = {978-1449327453},
  note = {An exhaustive collection of useful regular expressions in several programming languages}
}

@book{Grue2015,
  author = {Steve Gruenert and Todd Whitaker},
  title = {{School Culture Rewired: How to Define, Assess, and Transform It}},
  publisher = {ASCD},
  year = {2015},
  isbn = {978-1416619901},
  note = {The source of a much-quoted observation on culture.}
}

@book{Hadd2010,
  author = {Steven Haddock and Casey Dunn},
  title = {{Practical Computing for Biologists}},
  publisher = {Sinauer Associates},
  year = {2010},
  isbn = {978-0878933914},
  note = {An all-in-one guide to basic programming skills for researchers of all kind.}
}

@article{Hart2016,
  author = {Edmund M. Hart and Pauline Barmby and David LeBauer and Fran{\c{c}}ois Michonneau and Sarah Mount and Patrick Mulrooney and Timoth{\'{e}}e Poisot and Kara H. Woo and Naupaka B. Zimmerman and Jeffrey W. Hollister},
  doi = {10.1371/journal.pcbi.1005097},
  url = {https://doi.org/10.1371/journal.pcbi.1005097},
  year = {2016},
  month = {Oct},
  publisher = {Public Library of Science ({PLoS})},
  volume = {12},
  number = {10},
  pages = {e1005097},
  title = {{Ten Simple Rules for Digital Data Storage}},
  journal = {{PLOS} Computational Biology}
}

@article{Irvi2019,
  author = {Irving, D. B. and Wijffels, S. and Church, J. A.},
  title = {{Anthropogenic Aerosols, Greenhouse Gases, and the Uptake, Transport, and Storage of Excess Heat in the Climate System}},
  journal = {Geophysical Research Letters},
  volume = {46},
  number = {9},
  pages = {4894-4903},
  url = {https://doi.org/10.1029/2019GL082015},
  year = {2019}
}

@book{Jans2014,
  author = {Jeroen Janssens},
  title = {{Data Science at the Command Line}},
  publisher = {O'Reilly Media},
  year = {2014},
  isbn = {978-1491947852},
  note = {How to process data using the Unix shell.}
}

@book{Kern1999,
  author = {Brian W. Kernighan and Rob Pike},
  title = {{The Practice of Programming}},
  year = {1999},
  publisher = {Addison-Wesley},
  isbn = {9788177582482},
  link = {https://isbndb.com/book/9788177582482},
  note = {A programming style manual written by two of the creators of modern computing.}
}

@article{Lamp2020,
  author = {Lamprecht, Anna-Lena and Garcia, Leyla and Kuzak, Mateusz and Martinez, Carlos and Arcila, Ricardo and {Martin Del Pico}, Eva and {Dominguez Del Angel}, Victoria and van de Sandt, Stephanie and Ison, Jon and Martinez, Paula Andrea and McQuilton, Peter and Valencia, Alfonso and Harrow, Jennifer and Psomopoulos, Fotis and Gelpi, Josep Ll. and {Chue Hong}, Neil and Goble, Carole and Capella-Gutierrez, Salvador},
  journal = {Data Science},
  title = {{Towards FAIR Principles for Research Software}},
  year = {2020},
  number = {1},
  volume = {3},
  url = {https://doi.org/10.3233/DS-190026},
  pages = {37--59}
}

@book{Lee1962,
  author = {Stan Lee},
  title = {{Amazing Fantasy \#15}},
  publisher = {Marvel},
  year = {1962},
  note = {Popularized the phrase, "With great power comes great responsibility."}
}

@article{Leon2017,
  author = {Aljoscha Leonhardt and Matthias Meier and Etienne Serbe and Hubert Eichner and Alexander Borst},
  journal = {{PLoS ONE}},
  publisher = {Public Library of Science},
  title = {{Neural Mechanisms Underlying Sensitivity to Reverse-phi Motion in the Fly}},
  year = {2017},
  month = {12},
  volume = {12},
  url = {https://doi.org/10.1371/journal.pone.0189019},
  pages = {1-25},
  number = {12},
  doi = {10.1371/journal.pone.0189019}
}

@article{Lin2020,
  author = {Sarah Lin and Ibraheem Ali and Greg Wilson},
  title = {{Ten Quick Tips for Making Things Findable}},
  journal = {{PLOS} Computational Biology},
  publisher = {Public Library of Science},
  year = {2020},
  month = {12},
  volume = {16},
  url = {https://doi.org/10.1371/journal.pcbi.1008469},
  pages = {1-10},
  doi = {10.1371/journal.pcbi.1008469},
  note = {How to organize and label information to make it easier to search and discover.}
}

@book{Lind2008,
  author = {Van Lindberg},
  title = {{Intellectual Property and Open Source: A Practical Guide to Protecting Code}},
  publisher = {O'Reilly Media},
  isbn = {978-0596517960},
  year = {2008},
  note = {A thorough dive into intellectual property issues related to open source software}
}

@misc{Maju2019,
  author = {Suvodeep Majumder and Joymallya Chakraborty and Amritanshu Agrawal and Tim Menzies},
  title = {{Why Software Projects Need Heroes (Lessons Learned from 1000+ Projects)}},
  year = {2019},
  url = {https://arxiv.org/abs/1904.09954},
  note = {An evidence-based exploration of the role of core developers in software production.}
}

@book{Mak2006,
  author = {Ronald Mak},
  title = {{The Martian Principles}},
  publisher = {Wiley},
  year = {2006},
  isbn = {0471789658},
  note = {A short, enjoyable guide to software architecture from someone whose code had to deal with Mars.}
}

@article{Meil2015,
  author = {Meili, Stephen},
  doi = {10.2139/ssrn.2668259},
  publisher = {SSRN Electronic Journal},
  journal = {Minnesota Legal Studies Research Paper},
  title = {{Do Human Rights Treaties Help Asylum-Seekers?: Lessons from the United Kingdom}},
  year = {2015},
  number = {15-41}
}

@misc{Meil2016,
  author = {Stephen Meili},
  doi = {10.3886/E17507V2},
  url = {http://www.openicpsr.org/openicpsr/project/100049/version/V2/view},
  title = {{Do Human Rights Treaties Help Asylum-Seekers: Findings from the U.K.}},
  publisher = {ICPSR - Interuniversity Consortium for Political and Social Research},
  year = {2016}
}

@article{Mich2015,
  author = {William K. Michener},
  doi = {10.1371/journal.pcbi.1004525},
  url = {https://doi.org/10.1371/journal.pcbi.1004525},
  year = {2015},
  month = {Oct},
  publisher = {Public Library of Science ({PLoS})},
  volume = {11},
  number = {10},
  pages = {e1004525},
  title = {{Ten Simple Rules for Creating a Good Data Management Plan}},
  journal = {{PLOS} Computational Biology}
}

@article{Mill1956,
  author = {George A. Miller},
  title = {{The Magical Number Seven, Plus or Minus Two: Some Limits on Our Capacity for Processing Information}},
  journal = {Psychological Review},
  volume = {63},
  number = {2},
  pages = {81--97},
  year = {1956},
  publisher = {American Psychological Association ({APA})},
  doi = {10.1037/h0043158},
  note = {The first definitive presentation of limits to human short-term memory.}
}

@article{Mill2006,
  author = {Greg Miller},
  doi = {10.1126/science.314.5807.1856},
  journal = {Science},
  number = {5807},
  pages = {1856--1857},
  title = {{A Scientist's Nightmare: Software Problem Leads to Five Retractions}},
  volume = {314},
  year = {2006}
}

@article{Mina1986,
  author = {Anne Minahan},
  title = {{Martha's Rules}},
  journal = {Affilia},
  volume = {1},
  number = {2},
  pages = {53--56},
  month = {Jun},
  year = {1986},
  publisher = {{SAGE} Publications},
  doi = {10.1177/088610998600100206},
  note = {Describes a lightweight set of rules for consensus-based decision making.}
}

@article{More2016,
  author = {Isabel Moreno-S{\'{a}}nchez and Francesc Font-Clos and {\'{A}}lvaro Corral},
  title = {{Large-scale Analysis of Zipf's Law in English Texts}},
  journal = {{PLoS ONE}},
  volume = {11},
  number = {1},
  pages = {e0147073},
  month = {Jan},
  year = {2016},
  doi = {10.1371/journal.pone.0147073},
}

@article{Mori2012,
  author = {Andrew Morin and Jennifer Urban and Piotr Sliz},
  journal = {{PLoS} Computational Biology},
  publisher = {Public Library of Science ({PLoS})},
  title = {{A Quick Guide to Software Licensing for the Scientist-Programmer}},
  year = {2012},
  month = {Jul},
  volume = {8},
  number = {7},
  pages = {e1002598},
  doi = {10.1371/journal.pcbi.1002598},
  note = {A short introduction to software licensing for non-specialists.}
}

@article{Nobl2009,
  author = {William Stafford Noble},
  title = {{A Quick Guide to Organizing Computational Biology Projects}},
  journal = {{PLoS} Computational Biology},
  volume = {5},
  number = {7},
  month = {Jul},
  year = {2009},
  pages = {e1000424},
  doi = {10.1371/journal.pcbi.1000424},
  link = {http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1000424},
  note = {How to organize a small to medium-sized bioinformatics project.}
}

@misc{Nust2020,
  author = {Daniel N{\"u}st and Vanessa Sochat and Ben Marwick and Stephen Eglen and Tim Head and Tony Hirst and Benjamin Evans},
  title = {{Ten Simple Rules for Writing Dockerfiles for Reproducible Data Science}},
  year = {2020},
  doi = {10.31219/osf.io/fsd7t},
  publisher = {OSF Preprints}
}

@inproceedings{Pere2013,
  author = {Santiago {Perez De Rosso} and Daniel Jackson},
  title = {{What's Wrong With Git?}},
  booktitle = {Proc.\ 2013 {ACM} International Symposium on New Ideas, New Paradigms, and Reflections on Programming and Software ({Onward!'13})},
  year = {2013},
  doi = {10.1145/2509578.2509584},
  note = {The first in a series exploring what's wrong with Git.}
}

@inproceedings{Petr2014,
  author = {Marian Petre and Greg Wilson},
  title = {{Code Review For and By Scientists}},
  booktitle = {Proc.\ Second Workshop on Sustainable Software for Science: Practice and Experience},
  year = {2014},
  doi = {arXiv:1407.5648},
  note = {Found that effective code review depends on understanding the scientific problem that software is studying.}
}

@article{Pott2019,
  author = {Barney I. Potter and Rebecca Garten and James Hadfield and John Huddleston and John Barnes and Thomas Rowe and Lizheng Guo and Xiyan Xu and Richard A. Neher and Trevor Bedford and David Wentworth},
  title = {{Evolution and Rapid Spread of a Reassortant A(H3N2) Virus that Predominated the 2017--2018 Influenza Season}},
  volume = {5},
  number = {2},
  pages = {vez046},
  year = {2019},
  url = {https://doi.org/10.1093/ve/vez046},
  journal = {Virus Evolution}
}

@misc{Quen2018,
  author = {Jo{\"e}l Quenneville},
  title = {{Code Review}},
  url = {https://github.com/thoughtbot/guides/tree/master/code-review},
  year = {2018},
  note = {Guidelines for code review}
}

@book{Ray2014,
  author = {Eric J. Ray and Deborah S. Ray},
  title = {{Unix and Linux: Visual QuickStart Guide}},
  publisher = {Peachpit Press},
  year = {2014},
  isbn = {978-0321997548},
  note = {An excellent general introduction to all things Unix.}
}

@misc{Sank2018,
  author = {Sandya Sankarram},
  title = {{Unlearning Toxic Behaviors in a Code Review Culture}},
  url = {https://medium.freecodecamp.org/unlearning-toxic-behaviors-in-a-code-review-culture-b7c295452a3c},
  year = {2018},
  note = {What \emph{not} to do in code review.}
}

@misc{Scal2012,
  author = {John Scalzi},
  title = {{Straight White Male: The Lowest Difficulty Setting There Is}},
  url = {https://whatever.scalzi.com/2012/05/15/straight-white-male-the-lowest-difficulty-setting-there-is/},
  year = {2012}
}

@inproceedings{Scha2018,
  author = {Andrea Schankin and Annika Berger and Daniel V. Holt and Johannes C. Hofmeister and Till Riedel and Michael Beigl},
  doi = {10.1145/3196321.3196332},
  url = {https://doi.org/10.1145/3196321.3196332},
  year = {2018},
  publisher = {{ACM} Press},
  title = {{Descriptive Compound Identifier Names Improve Source Code Comprehension}},
  booktitle = {Proc.\ 26th Conference on Program Comprehension (ICPC'18)}
}

@book{Scop2015,
  author = {Anthony Scopatz and Kathryn D. Huff},
  title = {{Effective Computation in Physics}},
  publisher = {O'Reilly Media},
  year = {2015},
  isbn = {978-1491901533},
  note = {A comprehensive introduction to scientific computing in Python}
}

@article{Sega2005,
  author = {Judith Segal},
  title = {{When Software Engineers Met Research Scientists: A Case Study}},
  journal = {Empirical Software Engineering},
  volume = {10},
  number = {4},
  pages = {517-536},
  year = {2005},
  doi = {10.1007/s10664-005-3865-y},
  note = {Looks at the chicken-and-egg problem of software review in science.}
}

@article{Shol2019,
  author = {Dan Sholler and Igor Steinmacher and Denae Ford and Mara Averick and Mike Hoye and Greg Wilson},
  doi = {10.1371/journal.pcbi.1007296},
  url = {https://doi.org/10.1371/journal.pcbi.1007296},
  year = {2019},
  month = {Sep},
  publisher = {Public Library of Science ({PLoS})},
  volume = {15},
  number = {9},
  pages = {e1007296},
  editor = {Scott Markel},
  title = {{Ten Simple Rules for Helping Newcomers Become Contributors to Open Projects}},
  journal = {{PLOS} Computational Biology}
}

@book{Smit2011,
  author = {Peter Smith},
  title = {{Software Build Systems: Principles and Experience}},
  publisher = {Addison-Wesley Professional},
  year = {2011},
  isbn = {978-0321717283},
  note = {A thorough, readable exploration of how software build systems and tools work.}
}

@inproceedings{Stei2014,
  author = {Igor Steinmacher and Igor Scaliante Wiese and Tayana Conte and Marco Aur{\'{e}}lio Gerosa and David Redmiles},
  title = {{The Hard Life of Open Source Software Project Newcomers}},
  booktitle = {Proc.\ 7th International Workshop on Cooperative and Human Aspects of Software Engineering ({CHASE}/14)},
  year = {2014},
  doi = {10.1145/2593702.2593704},
  note = {An empirical look at newcomers' experiences in open source software projects.}
}

@article{Tasc2017,
  author = {Morgan Taschuk and Greg Wilson},
  title = {{Ten Simple Rules for Making Research Software More Robust}},
  journal = {{PLoS} Computational Biology},
  publisher = {Public Library of Science ({PLoS})},
  volume = {13},
  number = {4},
  month = {Apr},
  pages = {e1005412},
  year = {2017},
  doi = {10.1371/journal.pcbi.1005412},
  note = {A short guide to making research software usable by other people.}
}

@misc{Tier2020,
  author = {Nicholas J Tierney and Karthik Ram},
  title = {{A Realistic Guide to Making Data Available alongside Code to Improve Reproducibility}},
  year = {2020},
  url = {https://arxiv.org/abs/2002.11626},
  note = {A guide to what the working scientist can feasibly do to share data.}
}

@misc{Troy2018,
  author = {Chelsea Troy},
  title = {{Why do Remote Meetings Suck so Much?}},
  url = {https://chelseatroy.com/2018/03/29/why-do-remote-meetings-suck-so-much/},
  year = {2018}
}

@misc{Vand2014,
  author = {Jake VanderPlas},
  title = {{The Whys and Hows of Licensing Scientific Code}},
  url = {https://www.astrobetter.com/blog/2014/03/10/the-whys-and-hows-of-licensing-scientific-code/},
  year = {2014}
}

@misc{Wick2016,
  author = {Elizabeth Wickes and Ayla Stein},
  title = {{Data Documentation Material}},
  url = {http://hdl.handle.net/2142/91611},
  year = {2016},
  note = {Source material for our lesson on data sharing.}
}

@article{Wils2014,
  author = {Greg Wilson and D. A. Aruliah and C. Titus Brown and Neil P. Chue Hong and Matt Davis and Richard T. Guy and Steven H. D. Haddock and Kathryn D. Huff and Ian M. Mitchell and Mark D. Plumbley and Ben Waugh and Ethan P. White and Paul Wilson},
  journal = {{PLoS} Biology},
  publisher = {Public Library of Science},
  title = {{Best Practices for Scientific Computing}},
  year = {2014},
  month = {Jan},
  pages = {e1001745},
  volume = {12},
  number = {1},
  doi = {10.1371/journal.pbio.1001745},
  link = {https://doi.org/10.1371/journal.pbio.1001745},
  note = {Outlines what a mature research software project should look like.}
}

@article{Wils2017,
  author = {Greg Wilson and Jennifer Bryan and Karen Cranston and Justin Kitzes and Lex Nederbragt and Tracy K. Teal},
  journal = {{PLoS} Computational Biology},
  publisher = {Public Library of Science},
  title = {{Good Enough Practices in Scientific Computing}},
  year = {2017},
  month = {Jun},
  volume = {13},
  number = {6},
  doi = {10.1371/journal.pcbi.1005510},
  link = {https://doi.org/10.1371/journal.pcbi.1005510},
  pages = {e1005510},
  note = {Outlines what a ``good enough'' research software project should look like.}
}

@book{Wils2018,
  author = {Greg Wilson},
  title = {{Teaching Tech Together}},
  publisher = {Taylor \& Francis},
  year = {2019},
  isbn = {978-0-367-35328-5},
  link = {http://teachtogether.tech},
  note = {How to create and deliver lessons that work and build a teaching community around them.}
}

@article{Wils2019,
  author = {Greg Wilson},
  doi = {10.1371/journal.pcbi.1006915},
  url = {https://doi.org/10.1371/journal.pcbi.1006915},
  year = {2019},
  month = {Apr},
  publisher = {Public Library of Science ({PLoS})},
  volume = {15},
  number = {4},
  pages = {e1006915},
  editor = {Francis Ouellette},
  title = {{Ten Quick Tips for Creating an Effective Lesson}},
  journal = {{PLOS} Computational Biology}
}

@inproceedings{Xu2015,
  author = {Tianyin Xu and Long Jin and Xuepeng Fan and Yuanyuan Zhou and Shankar Pasupathy and Rukma Talwadker},
  title = {{Hey, You Have Given Me Too Many Knobs!: Understanding and Dealing with Over-Designed Configuration in System Software}},
  booktitle = {Proc.\ 10th Joint Meeting on Foundations of Software Engineering ({FSE'2015})},
  year = {2015},
  publisher = {{ACM} Press},
  doi = {10.1145/2786805.2786852},
  link = {https://doi.org/10.1145/2786805.2786852},
  note = {Examines the over-abundance of configuration options in software.}
}

@article{Zamp2020,
  author = {Fiorella Zampetti and Carmine Vassallo and Sebastiano Panichella and Gerardo Canfora and Harald Gall and Massimiliano Di Penta},
  doi = {10.1007/s10664-019-09785-8},
  url = {https://doi.org/10.1007/s10664-019-09785-8},
  year = {2020},
  month = {Jan},
  volume = {25},
  number = {2},
  pages = {1095--1135},
  title = {{An Empirical Characterization of Bad Practices in Continuous Integration}},
  journal = {Empirical Software Engineering},
  note = {Presents and categorizes common errors in continuous integration.}
}

@article{Zhan2020,
  author = {Letian Zhang},
  title = {{An Institutional Approach to Gender Diversity and Firm Performance}},
  journal = {Organization Science},
  volume = {31},
  number = {2},
  year = {2020},
  pages = {439-457},
  url = {https://doi.org/10.1287/orsc.2019.1297},
  note = {Shows that inclusivity has economic benefits as well as being a moral necessity.}
}