links.md

[amira-repo]: https://github.com/amira-khan/zipf
[anaconda]: https://www.anaconda.com/
[anaconda-cloud]: https://anaconda.org/
[anaconda-docs]: https://docs.anaconda.com/anaconda/
[argparse]: https://docs.python.org/3/library/argparse.html
[arxiv]: https://arxiv.org/
[bibtex]: http://www.bibtex.org/
[biorxiv]: https://www.biorxiv.org/
[bitbucket]: https://bitbucket.org/
[blab-h3n2-reassortment]: https://github.com/blab/h3n2-reassortment
[book-repo]: https://github.com/merely-useful/py-rse/
[borstlab-reversephi]: https://github.com/borstlab/reversephi_paper/
[captain-awkward]: https://captainawkward.com/
[carpentries]: https://carpentries.org/
[carpentries-install-instructions]: https://carpentries.github.io/workshop-template/#setup
[charles-rules]: https://geekfeminism.wikia.com/wiki/Charles%27_Rules_of_Argument
[choose-license]: https://choosealicense.com/
[code-smells-and-feels]: https://github.com/jennybc/code-smells-and-feels
[conda]: https://conda.io/
[conda-forge]: https://conda-forge.org/
[conda-forge-instructions]: https://conda-forge.org/#add_recipe
[conda-skeleton-pypi]: https://docs.conda.io/projects/conda-build/en/latest/user-guide/tutorials/build-pkgs-skeleton.html
[configparser]: https://docs.python.org/3/library/configparser.html
[covenant]: https://www.contributor-covenant.org
[creative-commons]: https://creativecommons.org/
[desc-cmt-msgs]: https://chris.beams.io/posts/git-commit/
[docker]: https://en.wikipedia.org/wiki/Docker_(software)
[dryad]: https://datadryad.org/
[dursi-pattern-rules]: https://github.com/ljdursi/make_pattern_rules
[explainshell]: http://explainshell.com
[fair-questionnaire]: https://ardc.edu.au/resources/working-with-data/fair-data/fair-self-assessment-tool
[figshare]: https://figshare.com/
[find-packages]: https://setuptools.readthedocs.io/en/latest/setuptools.html#using-find-packages
[geek-feminism]: https://geekfeminism.wikia.com/
[geoscience-data-journal]: https://rmets.onlinelibrary.wiley.com/journal/20496060
[geoscientific-model-development]: https://www.geoscientific-model-development.net/
[gistemp]: https://data.giss.nasa.gov/gistemp/
[git-ssh-bitbucket]: https://confluence.atlassian.com/bitbucket/set-up-ssh-for-git-728138079.html
[git-ssh-github]: https://help.github.com/articles/generating-ssh-keys
[git-ssh-gitlab]: https://about.gitlab.com/2014/03/04/add-ssh-key-screencast/
[github-contributors-guide]: https://docs.github.com/en/github/building-a-strong-community/setting-guidelines-for-repository-contributors
[github-gitignore]: https://github.com/github/gitignore
[github-release]:https://docs.github.com/en/github/administering-a-repository/managing-releases-in-a-repository
[github-release-link]: https://docs.github.com/en/github/administering-a-repository/linking-to-releases
[github-zenodo-tutorial]: https://guides.github.com/activities/citable-code/
[github]: https://github.com
[gitkraken]: https://www.gitkraken.com/
[gitlab]: https://gitlab.com/
[glob]: https://docs.python.org/3/library/glob.html
[gnu-make]: https://www.gnu.org/software/make/
[gnu-man-coreutils]: https://www.gnu.org/software/coreutils/manual/coreutils.html
[gnu-man]: https://www.gnu.org/manual/manual.html
[go-fair]: https://www.go-fair.org/fair-principles/
[google-style]: https://github.com/google/styleguide/blob/gh-pages/pyguide.md#38-comments-and-docstrings
[heaps-law]: https://en.wikipedia.org/wiki/Heaps%27_law
[hippocratic-license]: https://firstdonoharm.dev/
[ini-format]: https://en.wikipedia.org/wiki/INI_file
[insight]: https://www.insightdatascience.com/
[irving-figshare]: https://doi.org/10.6084/m9.figshare.7575830
[jors]: https://openresearchsoftware.metajnl.com/
[jupyter]: https://jupyter.org/
[lint]: https://en.wikipedia.org/wiki/Lint_(software)
[make]: https://www.gnu.org/software/make/
[make-string-functions]: https://www.gnu.org/software/make/manual/html_node/Text-Functions.html#Text-Functions
[markdown]: https://en.wikipedia.org/wiki/Markdown
[matplotlib-style-tutorial]: https://matplotlib.org/tutorials/introductory/customizing.html
[meili-grant]: https://www.nsf.gov/awardsearch/showAward?AWD_ID=1228602
[meili-migration-article]: https://www.fmreview.org/fragilestates/meili
[meili-review-article]: https://lawdigitalcommons.bc.edu/cgi/viewcontent.cgi?article=3318&context=bclr
[miniconda]: https://docs.conda.io/en/latest/miniconda.html
[model-coc]: https://geekfeminism.wikia.com/wiki/Conference_anti-harassment/Policy
[napoleon]: https://sphinxcontrib-napoleon.readthedocs.io/en/latest/
[numpydoc]: https://numpydoc.readthedocs.io/en/latest/
[orcid-registration]: https://orcid.org/register
[orwells-rules]: https://en.wikipedia.org/wiki/Politics_and_the_English_Language#Remedy_of_Six_Rules
[osf]: https://osf.io/
[osi-license-list]: https://opensource.org/licenses
[our-research]: http://ourresearch.org/
[pandas]: https://pandas.pydata.org/
[pep-8]: https://www.python.org/dev/peps/pep-0008/
[pep-8-hobgoblin]: https://www.python.org/dev/peps/pep-0008/#a-foolish-consistency-is-the-hobgoblin-of-little-minds
[pip]: https://pypi.org/project/pip/
[pipenv]: https://docs.pipenv.org/
[project-gutenberg]: https://www.gutenberg.org/
[pypi-user-guide]: https://packaging.python.org/guides/using-testpypi/
[pypi]: https://pypi.org/
[pytest]: https://pytest.org/
[python]: https://www.python.org/
[python-102]: https://python-102.readthedocs.io/
[python-exceptions]: https://docs.python.org/3/library/exceptions.html#exception-hierarchy
[python-graph-gallery-styles]: https://python-graph-gallery.com/199-matplotlib-style-sheets/
[python-import]: https://chrisyeh96.github.io/2017/08/08/definitive-guide-python-imports.html
[python-standard-library]: https://docs.python.org/3/library/
[python-traceback]: https://docs.python.org/3/library/traceback.html
[python-wheels]: https://realpython.com/python-wheels/
[readthedocs]: https://docs.readthedocs.io/en/latest/
[readthedocs-config]: https://docs.readthedocs.io/en/stable/config-file/v2.html
[rstudio-ide]: https://www.rstudio.com/products/rstudio/
[scientific-data]: https://www.nature.com/sdata/
[scipy-optimize]: https://docs.scipy.org/doc/scipy/reference/optimize.html
[setuptools]: https://setuptools.readthedocs.io/
[setuptools-setup-args]: https://packaging.python.org/guides/distributing-packages-using-setuptools/#setup-args
[snakemake]: https://snakemake.readthedocs.io/
[so-bash]: https://stackoverflow.com/questions/tagged/bash
[sphinx]: https://www.sphinx-doc.org/en/master/
[sphinx-docstring-docs]: https://www.sphinx-doc.org/en/master/usage/restructuredtext/domains.html#info-field-lists
[stack-overflow-good-question]: https://stackoverflow.com/help/how-to-ask
[stack-overflow]: https://stackoverflow.com/
[swc-git]: http://swcarpentry.github.io/git-novice/
[swc-make]: http://swcarpentry.github.io/make-novice/
[swc-shell-novice]: http://swcarpentry.github.io/shell-novice/
[testpypi]: https://test.pypi.org
[theoj]: https://joss.theoj.org/
[theoj-checklist]: https://joss.readthedocs.io/en/latest/review_checklist.html
[tldr-gpl]: https://tldrlegal.com/license/gnu-general-public-license-v3-(gpl-3)
[tldr]: https://tldr.sh/
[travis-ci]: https://travis-ci.com/
[twine]: https://twine.readthedocs.io/en/latest/
[ubc-mds-make-windows]: https://ubc-mds.github.io/resources_pages/install_ds_stack_windows/#make
[udhr]: https://en.wikipedia.org/wiki/Universal_Declaration_of_Human_Rights
[ukho-accessibility]: https://ukhomeoffice.github.io/accessibility-posters/posters/accessibility-posters.pdf
[uwm-git-lesson]: https://uw-madison-datascience.github.io/git-novice-custom/
[virtualenv]: https://virtualenv.pypa.io/
[wayback-machine]: https://web.archive.org/
[windspharm]: https://ajdawson.github.io/windspharm/latest/
[xcode]: https://developer.apple.com/xcode/
[zenodo]: https://zenodo.org/
[zipf-project-page]: https://test.pypi.org/project/zipf/
[zipfs-law]: https://en.wikipedia.org/wiki/Zipf%27s_law