diff --git a/.github/workflows/documentation.yml b/.github/workflows/documentation.yml index 9950ae77f..462bc6408 100644 --- a/.github/workflows/documentation.yml +++ b/.github/workflows/documentation.yml @@ -6,34 +6,34 @@ jobs: runs-on: ubuntu-latest defaults: run: - shell: bash -l {0} # Required for conda commands. + shell: bash -l {0} # Required for conda commands. steps: - - name: Checkout repository - uses: actions/checkout@v2 - with: - ref: develop # Checkout `develop` branch to build documentation instead of using current branch / commit. - fetch-depth: 0 # Fetch all branches and tags, to build documentation for all branches and tags. - submodules: false # Not needed to build documentation. - - name: Set up Python - uses: conda-incubator/setup-miniconda@v2 - with: - python-version: 3.8 - - name: Install dependencies - run: | - conda install sphinx - pip install -r docs/requirements.txt - - name: Build documentation HTML with Sphinx - run: | - sphinx-multiversion docs docs/_build/html - cp docs/assets/gh-pages_index.html docs/_build/html/index.html - - name: Deploy documentation HTML to Github Pages - uses: peaceiris/actions-gh-pages@v3 - with: - github_token: ${{ secrets.GITHUB_TOKEN }} - publish_dir: docs/_build/html/ - keep_files: false - force_orphan: true - full_commit_message: Deploy documentation for ${{ github.sha }} - user_name: MESMO Bot - user_email: bot@mesmo.dev + - name: Checkout repository + uses: actions/checkout@v2 + with: + ref: develop # Checkout `develop` branch to build documentation instead of using current branch / commit. + fetch-depth: 0 # Fetch all branches and tags, to build documentation for all branches and tags. + submodules: false # Not needed to build documentation. + - name: Set up Python + uses: conda-incubator/setup-miniconda@v2 + with: + python-version: 3.8 + - name: Install dependencies + run: | + conda install sphinx + pip install -r docs/requirements.txt + - name: Build documentation HTML with Sphinx + run: | + sphinx-multiversion docs docs/_build/html + cp docs/assets/gh-pages_index.html docs/_build/html/index.html + - name: Deploy documentation HTML to Github Pages + uses: peaceiris/actions-gh-pages@v3 + with: + github_token: ${{ secrets.GITHUB_TOKEN }} + publish_dir: docs/_build/html/ + keep_files: false + force_orphan: true + full_commit_message: Deploy documentation for ${{ github.sha }} + user_name: MESMO Bot + user_email: bot@mesmo.dev diff --git a/.github/workflows/maintenance.yml b/.github/workflows/maintenance.yml index b8111d045..bbb4f4353 100644 --- a/.github/workflows/maintenance.yml +++ b/.github/workflows/maintenance.yml @@ -12,36 +12,32 @@ jobs: runs-on: ${{ matrix.os }} strategy: matrix: - os: [ - windows-latest, - macos-latest, - ubuntu-latest - ] + os: [windows-latest, macos-latest, ubuntu-latest] defaults: run: - shell: bash -l {0} # Required for conda commands. + shell: bash -l {0} # Required for conda commands. steps: - - name: Checkout repository - uses: actions/checkout@v2 - with: - submodules: recursive - - name: Set up Python - uses: conda-incubator/setup-miniconda@v2 - - name: Install dependencies - run: | - conda create -n mesmo -c conda-forge python=3.10 contextily cvxpy numpy pandas scipy - conda activate mesmo - python development_setup.py - - name: Get new environment-${{ matrix.os }}.yml - run: | - rm -f environment-* - conda env export -n mesmo --no-builds | grep -v "^prefix: " > environment-${{ matrix.os }}.yml - - name: Store environment-${{ matrix.os }}.yml - uses: actions/upload-artifact@v2 - with: - name: environment-${{ matrix.os }}.yml - path: environment-${{ matrix.os }}.yml + - name: Checkout repository + uses: actions/checkout@v2 + with: + submodules: recursive + - name: Set up Python + uses: conda-incubator/setup-miniconda@v2 + - name: Install dependencies + run: | + conda create -n mesmo -c conda-forge python=3.10 contextily + conda activate mesmo + python development_setup.py + - name: Get new environment-${{ matrix.os }}.yml + run: | + rm -f environment-* + conda env export -n mesmo --no-builds | grep -v "^prefix: " > environment-${{ matrix.os }}.yml + - name: Store environment-${{ matrix.os }}.yml + uses: actions/upload-artifact@v2 + with: + name: environment-${{ matrix.os }}.yml + path: environment-${{ matrix.os }}.yml run-maintenance: needs: get-environment @@ -51,33 +47,33 @@ jobs: shell: bash -l {0} steps: - - name: Checkout repository - uses: actions/checkout@v2 - with: - token: ${{ secrets.MESMO_BOT_PAT }} - - name: Remove old environment files - run: | - rm -f environment-* - - name: Get cached environment-windows-latest.yml - uses: actions/download-artifact@v2 - with: - name: environment-windows-latest.yml - - name: Get cached environment-macos-latest.yml - uses: actions/download-artifact@v2 - with: - name: environment-macos-latest.yml - - name: Get cached environment-ubuntu-latest.yml - uses: actions/download-artifact@v2 - with: - name: environment-ubuntu-latest.yml - - name: Run automatic code formatting - uses: psf/black@stable - with: - options: "--line-length 120" - # For future reference: Exclude submodules if this runs too long. - - name: Commit changes - uses: stefanzweifel/git-auto-commit-action@v4 - with: - commit_message: Automated maintenance for ${{ github.sha }} - commit_user_name: MESMO Bot - commit_user_email: bot@mesmo.dev + - name: Checkout repository + uses: actions/checkout@v2 + with: + token: ${{ secrets.MESMO_BOT_PAT }} + - name: Remove old environment files + run: | + rm -f environment-* + - name: Get cached environment-windows-latest.yml + uses: actions/download-artifact@v2 + with: + name: environment-windows-latest.yml + - name: Get cached environment-macos-latest.yml + uses: actions/download-artifact@v2 + with: + name: environment-macos-latest.yml + - name: Get cached environment-ubuntu-latest.yml + uses: actions/download-artifact@v2 + with: + name: environment-ubuntu-latest.yml + - name: Run automatic code formatting + uses: psf/black@stable + with: + options: "--line-length 120" + # For future reference: Exclude submodules if this runs too long. + - name: Commit changes + uses: stefanzweifel/git-auto-commit-action@v4 + with: + commit_message: Automated maintenance for ${{ github.sha }} + commit_user_name: MESMO Bot + commit_user_email: bot@mesmo.dev diff --git a/.github/workflows/pythontests.yml b/.github/workflows/pythontests.yml index 6955ef55f..2f7806472 100644 --- a/.github/workflows/pythontests.yml +++ b/.github/workflows/pythontests.yml @@ -7,41 +7,37 @@ jobs: strategy: fail-fast: false matrix: - os: [ - windows-latest, - macos-latest, - ubuntu-latest - ] + os: [windows-latest, macos-latest, ubuntu-latest] python-version: ["3.10"] defaults: run: - shell: bash -l {0} # Required for conda commands. + shell: bash -l {0} # Required for conda commands. steps: - - name: Checkout repository - uses: actions/checkout@v2 - with: - submodules: recursive - - name: Set up Python - uses: conda-incubator/setup-miniconda@v2 - - name: Install dependencies - run: | - conda create -n mesmo -c conda-forge python=${{ matrix.python-version }} contextily cvxpy numpy pandas scipy - conda activate mesmo - python development_setup.py - - name: Run tests with coverage report - run: | - conda activate mesmo - coverage run -m unittest discover tests - coverage xml - - name: Report coverage to Codecov - if: always() - continue-on-error: true - uses: codecov/codecov-action@v2 - - name: Report coverage to Codacy - if: always() - continue-on-error: true - uses: codacy/codacy-coverage-reporter-action@v1 - with: - project-token: ${{ secrets.CODACY_PROJECT_TOKEN }} - coverage-reports: coverage.xml + - name: Checkout repository + uses: actions/checkout@v2 + with: + submodules: recursive + - name: Set up Python + uses: conda-incubator/setup-miniconda@v2 + - name: Install dependencies + run: | + conda create -n mesmo -c conda-forge python=${{ matrix.python-version }} contextily + conda activate mesmo + python development_setup.py + - name: Run tests with coverage report + run: | + conda activate mesmo + coverage run -m unittest discover tests + coverage xml + - name: Report coverage to Codecov + if: always() + continue-on-error: true + uses: codecov/codecov-action@v2 + - name: Report coverage to Codacy + if: always() + continue-on-error: true + uses: codacy/codacy-coverage-reporter-action@v1 + with: + project-token: ${{ secrets.CODACY_PROJECT_TOKEN }} + coverage-reports: coverage.xml diff --git a/README.md b/README.md index 0710714d7..1f1518801 100644 --- a/README.md +++ b/README.md @@ -37,20 +37,19 @@ The documentation is located at [mesmo-dev.github.io/mesmo](https://mesmo-dev.gi ## Installation -MESMO has not yet been deployed to Python `pip` / `conda` package indexes, but can be installed in a local development environment as follows: +MESMO has not yet been deployed to Python package indexes, but can be installed in a local development environment as follows: 1. Install `conda`-based Python distribution¹ such as [Anaconda](https://www.anaconda.com/distribution/) or [Miniconda](https://docs.conda.io/en/latest/miniconda.html) or [Miniforge](https://github.com/conda-forge/miniforge). 2. Clone or download the repository. Ensure that the `cobmo` submodule directory is loaded as well. 3. In `conda`-enabled shell (e.g. Anaconda Prompt), run: - `cd path_to_mesmo_repository` - - `conda create -n mesmo -c conda-forge python=3.10 contextily cvxpy numpy pandas scipy` + - `conda create -n mesmo -c conda-forge python=3.10 contextily` - `conda activate mesmo` - `python development_setup.py` - - On Intel CPUs²: `conda install -c conda-forge "libblas=*=*mkl"` -MESMO ships with [HiGHS](https://highs.dev/) as default optimization solver³, but also supports [Gurobi](http://www.gurobi.com/) and [any CVXPY-supported solvers](https://www.cvxpy.org/tutorial/advanced/index.html#choosing-a-solver). +MESMO ships with [HiGHS](https://highs.dev/) as default optimization solver², but also supports [Gurobi](http://www.gurobi.com/) and [any CVXPY-supported solvers](https://www.cvxpy.org/tutorial/advanced/index.html#choosing-a-solver). -For notes ¹/²/³ and alternative installation guide, see [docs/installation.md](docs/installation.md). +For notes ¹/² and alternative installation guide, see [docs/installation.md](docs/installation.md). ## Contributing diff --git a/cobmo b/cobmo index 98ad173c4..ad591d132 160000 --- a/cobmo +++ b/cobmo @@ -1 +1 @@ -Subproject commit 98ad173c4fc3777d709bad59469e66df536f465f +Subproject commit ad591d13256f5aeccb5ea2609079cc7b9d392026 diff --git a/development_setup.py b/development_setup.py index bbf0ea9f1..07fe82345 100644 --- a/development_setup.py +++ b/development_setup.py @@ -35,20 +35,16 @@ def main(): subprocess.check_call(["git", "-C", f"{base_path}", "submodule", "update", "--init", "--recursive"]) except FileNotFoundError as exception: raise FileNotFoundError( - f"ERROR: No setup file found for submodule `{submodule}`. " + f"No setup file found for submodule `{submodule}`. " f"Please check if the submodule is loaded correctly." ) from exception - # Install submodules in develop mode. - if run_all: - print("Installing submodules in development mode.") - for submodule in submodules: - subprocess.check_call([sys.executable, "-m", "pip", "install", "-e", f"{base_path / submodule}"]) - - # Install MESMO. + # Install MESMO and submodules in develop mode. if run_all: + print("Installing poetry package management tool.") + subprocess.check_call([sys.executable, "-m", "pip", "install", "poetry"]) print("Installing MESMO in development mode.") - subprocess.check_call([sys.executable, "-m", "pip", "install", "-e", f"{base_path}[tests]"]) + subprocess.check_call([sys.executable, "-m", "poetry", "install"], cwd=base_path) # Install HiGHS solver. if run_all or run_highs: diff --git a/docs/conf.py b/docs/conf.py index 0e7b0b10c..5d51cefc3 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -48,7 +48,7 @@ "plotly", "pyyaml", "pyomo", # Deprecated. - "ray", + "ray", # Deprecated. "scipy", "tqdm", ] diff --git a/docs/installation.md b/docs/installation.md index ba941744e..66731bc1d 100644 --- a/docs/installation.md +++ b/docs/installation.md @@ -2,26 +2,23 @@ ## Recommended installation -MESMO has not yet been deployed to Python `pip` / `conda` package indexes, but can be installed in a local development environment as follows: +MESMO has not yet been deployed to Python package indexes, but can be installed in a local development environment as follows: 1. Install `conda`-based Python distribution¹ such as [Anaconda](https://www.anaconda.com/distribution/) or [Miniconda](https://docs.conda.io/en/latest/miniconda.html) or [Miniforge](https://github.com/conda-forge/miniforge). 2. Clone or download the repository. Ensure that the `cobmo` submodule directory is loaded as well. 3. In `conda`-enabled shell (e.g. Anaconda Prompt), run: - `cd path_to_mesmo_repository` - - `conda create -n mesmo -c conda-forge python=3.10 contextily cvxpy numpy pandas scipy` + - `conda create -n mesmo -c conda-forge python=3.10 contextily` - `conda activate mesmo` - `python development_setup.py` - - On Intel CPUs²: `conda install -c conda-forge "libblas=*=*mkl"` -MESMO ships with [HiGHS](https://highs.dev/) as default optimization solver³, but also supports [Gurobi](http://www.gurobi.com/) and [any CVXPY-supported solvers](https://www.cvxpy.org/tutorial/advanced/index.html#choosing-a-solver). +MESMO ships with [HiGHS](https://highs.dev/) as default optimization solver², but also supports [Gurobi](http://www.gurobi.com/) and [any CVXPY-supported solvers](https://www.cvxpy.org/tutorial/advanced/index.html#choosing-a-solver). ### Notes -¹ The installation via `conda` is recommended, because it sets up a dedicated Python environment and supports the performant Intel MKL math library on Intel CPUs for `numpy` / `scipy`. It also allows installing the `contextily` package on Windows, which is required for some geographical plots. The direct installation via `pip` in a non-`conda` environment is also possible, but is currently not tested. +¹ The installation via `conda` is recommended, because it also allows installing the `contextily` package on Windows, which is required for some geographical plots. The direct installation via `pip` in a non-`conda` environment is also possible, but is currently not tested. -² On Intel CPUs, using the Intel MKL math library enables better performance in `numpy` / `scipy` over the default OpenBLAS library. With conda-forge, these libraries can be configured via [`conda install` command](https://conda-forge.org/docs/maintainer/knowledge_base.html#switching-blas-implementation). - -³ HiGHS is currently MESMO's default optimization solver and the HiGHS binaries are automatically fetched during MESMO setup. Other solvers can be selected via [MESMO configuration](configuration_reference.md#optimization-solver-configuration). For better performance, MESMO implements direct solver interfaces to HiGHS and Gurobi. Other solvers are indirectly supported [via CVXPY](https://www.cvxpy.org/tutorial/advanced/index.html#choosing-a-solver). CVXPY comes bundled with several open-source solvers and supports additional solvers via manual installation (see "Install with ... support" sections in [CVPXY installation guide](https://www.cvxpy.org/install/index.html)). Note that interfacing solvers via CVXPY currently has [performance limitations](https://github.com/cvxpy/cvxpy/issues/704) for large-scale scenarios. +² HiGHS is currently MESMO's default optimization solver and the HiGHS binaries are automatically fetched during MESMO setup. Other solvers can be selected via [MESMO configuration](configuration_reference.md#optimization-solver-configuration). For better performance, MESMO implements direct solver interfaces to HiGHS and Gurobi. Other solvers are indirectly supported [via CVXPY](https://www.cvxpy.org/tutorial/advanced/index.html#choosing-a-solver). CVXPY comes bundled with several open-source solvers and supports additional solvers via manual installation (see "Install with ... support" sections in [CVPXY installation guide](https://www.cvxpy.org/install/index.html)). Note that interfacing solvers via CVXPY currently has [performance limitations](https://github.com/cvxpy/cvxpy/issues/704) for large-scale scenarios. ## Alternative installation diff --git a/mesmo/config.py b/mesmo/config.py index b0fb32ba7..c5022fccc 100644 --- a/mesmo/config.py +++ b/mesmo/config.py @@ -1,13 +1,14 @@ """Configuration module.""" -import dynaconf import logging +import multiprocessing +import pathlib + +import dynaconf import matplotlib import matplotlib.pyplot as plt -import multiprocessing import numpy as np import pandas as pd -import pathlib import plotly.graph_objects as go import plotly.io as pio @@ -91,9 +92,7 @@ def get_parallel_pool() -> multiprocessing.Pool: """ # Obtain multiprocessing pool. - import ray.util.multiprocessing - - return ray.util.multiprocessing.Pool() + return multiprocessing.Pool() # Obtain repository base directory path. diff --git a/mesmo/config_default.yml b/mesmo/config_default.yml index fb03ad3b9..e0e2cdc45 100644 --- a/mesmo/config_default.yml +++ b/mesmo/config_default.yml @@ -11,28 +11,28 @@ paths: cobmo_additional_data: [] highs_solver: ./highs/bin/highs optimization: - solver_name: highs # Choices: 'highs', 'gurobi' or any valid solver name for CVXPY in lower caps. + solver_name: highs # Choices: 'highs', 'gurobi' or any valid solver name for CVXPY in lower caps. solver_interface: direct # Choices: 'direct' or 'cvxpy'. If not defined, will use 'direct'. show_solver_output: true # Choices: 'true' or 'false'. If 'true', activate verbose solver output. - time_limit: # Solver time limit in seconds. If not defined, will use infinite. Only for Gurobi and CPLEX. + time_limit: # Solver time limit in seconds. If not defined, will use infinite. Only for Gurobi and CPLEX. multiprocessing: - run_parallel: false # Disabled by default to avoid unexpected issues. - cpu_share: 1.0 # Maximum share of CPU cores to use for parallel processing. + run_parallel: false # Disabled by default to avoid unexpected issues. + cpu_share: 1.0 # Maximum share of CPU cores to use for parallel processing. logs: - level: info # Choices: `debug`, `info`, `warn`. - format: '%(asctime)s | %(levelname)s | %(message)s' + level: info # Choices: `debug`, `info`, `warn`. + format: "%(asctime)s | %(levelname)s | %(message)s" tests: - scenario_name: singapore_6node # Defines scenario which is considered in tests. - thermal_grid_scenario_name: singapore_tanjongpagar # Defines scenario which is considered in thermal grid tests. + scenario_name: singapore_6node # Defines scenario which is considered in tests. + thermal_grid_scenario_name: singapore_tanjongpagar # Defines scenario which is considered in thermal grid tests. plots: - matplotlib_style: seaborn-colorblind + matplotlib_style: seaborn-v0_8-colorblind matplotlib_colormap: viridis_r - matplotlib_font_family: ['Arial', 'Helvetica'] + matplotlib_font_family: ["Arial", "Helvetica"] matplotlib_figure_size: [7.0, 4.0] plotly_font_family: Arial plotly_font_size: 15 plotly_figure_width: 1000 plotly_figure_height: 500 file_format: html - add_basemap: false # If True, add basemap layer to grid plots for orientation. Requires installation of `contextily`. + add_basemap: false # If True, add basemap layer to grid plots for orientation. Requires installation of `contextily`. show_basemap_attribution: false # If True, show copyright notice for basemap. diff --git a/mesmo/data_models/base_model.py b/mesmo/data_models/base_model.py index cedf8f89b..c3beeee87 100644 --- a/mesmo/data_models/base_model.py +++ b/mesmo/data_models/base_model.py @@ -8,6 +8,7 @@ class BaseModel(pyd.BaseModel): """Custom base model which overrides pydantic default definitions.""" + model_config = pyd.ConfigDict( extra="allow", # TODO: In the long term, this should be set to false for more predictable model content arbitrary_types_allowed=True, @@ -16,5 +17,5 @@ class BaseModel(pyd.BaseModel): pd.Timestamp: lambda v: v.strftime("%Y-%m-%dT%H:%M:%S%z"), pd.Timedelta: timedelta_isoformat, np.bool_: bool, - } + }, ) diff --git a/mesmo/utils.py b/mesmo/utils.py index 412bca802..e41f83da4 100644 --- a/mesmo/utils.py +++ b/mesmo/utils.py @@ -5,22 +5,22 @@ import functools import itertools import logging -import numpy as np import os -import pandas as pd import pathlib import pickle -import plotly.graph_objects as go -import plotly.io as pio -import ray import re import shutil import subprocess import sys import time -import tqdm import typing +import numpy as np +import pandas as pd +import plotly.graph_objects as go +import plotly.io as pio +import tqdm + import mesmo.config logger = mesmo.config.get_logger(__name__) @@ -179,22 +179,14 @@ def starmap( argument_sequence = list(argument_sequence) if mesmo.config.config["multiprocessing"]["run_parallel"]: - # TODO: Remove old parallel pool traces. - # # If `run_parallel`, use starmap from multiprocessing pool for parallel execution. - # if mesmo.config.parallel_pool is None: - # # Setup parallel pool on first execution. - # log_time('parallel pool setup') - # mesmo.config.parallel_pool = mesmo.config.get_parallel_pool() - # log_time('parallel pool setup') - # results = mesmo.config.parallel_pool.starmap(function_partial, list(argument_sequence)) - - # If `run_parallel`, use `ray_starmap` for parallel execution. + # If `run_parallel`, use starmap from multiprocessing pool for parallel execution. if mesmo.config.parallel_pool is None: + # Setup parallel pool on first execution. log_time("parallel pool setup") - ray.init(num_cpus=max(int(mesmo.config.config["multiprocessing"]["cpu_share"] * os.cpu_count()), 1)) - mesmo.config.parallel_pool = True + mesmo.config.parallel_pool = mesmo.config.get_parallel_pool() log_time("parallel pool setup") - results = ray_starmap(function_partial, argument_sequence) + results = mesmo.config.parallel_pool.starmap(function_partial, list(argument_sequence)) + else: # If not `run_parallel`, use for loop for sequential execution. results = [ @@ -229,47 +221,6 @@ def chunk_list(list_in: typing.Union[typing.Iterable, typing.Sized], chunk_count return [[j for j in itertools.islice(list_iter, chunk_size)] for i in range(0, len(list_in), chunk_size)] -def ray_iterator(objects: list): - """Utility iterator for a list of parallelized ``ray`` objects. - - - This iterator enables progress reporting with ``tqdm`` in :func:`ray_get`. - """ - - while objects: - done, objects = ray.wait(objects) - yield ray.get(done[0]) - - -def ray_get(objects: list): - """Utility function for parallelized execution of a list of ``ray`` objects. - - - This function enables the parallelized execution with built-in progress reporting. - """ - - try: - for _ in tqdm.tqdm( - ray_iterator(objects), - total=len(objects), - disable=(mesmo.config.config["logs"]["level"] != "debug"), # Progress bar only shown in debug mode. - ): - pass - except TypeError: - pass - return ray.get(objects) - - -def ray_starmap(function_handle: typing.Callable, argument_sequence: list): - """Utility function to provide an interface similar to ``itertools.starmap`` for ``ray``. - - - This replicates the ``starmap`` interface of the ``multiprocessing`` API, which ray also supports, - but allows for additional modifications, e.g. progress reporting via :func:`ray_get`. - """ - - return ray_get( - [ray.remote(lambda *args: function_handle(*args)).remote(*arguments) for arguments in argument_sequence] - ) - - def log_time(label: str, log_level: str = "debug", logger_object: logging.Logger = logger): """Log start / end message and time duration for given label. diff --git a/poetry.lock b/poetry.lock new file mode 100644 index 000000000..2eab174fa --- /dev/null +++ b/poetry.lock @@ -0,0 +1,2627 @@ +# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. + +[[package]] +name = "affine" +version = "2.4.0" +description = "Matrices describing affine transformation of the plane" +optional = false +python-versions = ">=3.7" +files = [ + {file = "affine-2.4.0-py3-none-any.whl", hash = "sha256:8a3df80e2b2378aef598a83c1392efd47967afec4242021a0b06b4c7cbc61a92"}, + {file = "affine-2.4.0.tar.gz", hash = "sha256:a24d818d6a836c131976d22f8c27b8d3ca32d0af64c1d8d29deb7bafa4da1eea"}, +] + +[package.extras] +dev = 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Dependencies must also be added in `docs/conf.py` to `autodoc_mock_imports`. - "cvxpy", - "cobmo", # Not on package index. 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