TranscriptionRead in AlignmentModel?

[engreitz]

Why does the first constructor in the AlignmentModel have this message:
System.out.println("Entered the WRONG Alignment model ");

As far as I can tell, the only difference is that the second constructor has a TranscriptionRead parameter, which is irrelevant for DNA sequencing.

[sabahkadri]

Ooops. That's my fault. I had put in a debug statement I forgot to remove.
Please remove it.
On Mar 7, 2013 7:32 PM, "engreitz" notifications@github.com wrote:

Why does the first constructor in the AlignmentModel have this message:
System.out.println("Entered the WRONG Alignment model ");

As far as I can tell, the only difference is that the second constructor
has a TranscriptionRead parameter, which is irrelevant for DNA sequencing.

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[sabahkadri]

The latest commits by me fixed these.