diff --git a/man/get_extract_file.Rd b/man/get_extract_file.Rd index 932599b..b196828 100644 --- a/man/get_extract_file.Rd +++ b/man/get_extract_file.Rd @@ -37,7 +37,7 @@ conjunction with \code{\link{list_extract_files}}. \examples{ \dontrun{ # If you know the direct URL to your file, you don't need the file or project names: -get_extract_file(url = 'https://matos.asascience.com/projectfile/download/327') +get_extract_file(url = "https://matos.asascience.com/projectfile/download/327") get_extract_file(file = 1, project = 87) } diff --git a/man/get_otn_template.Rd b/man/get_otn_template.Rd index 5464e54..a5d0d9e 100644 --- a/man/get_otn_template.Rd +++ b/man/get_otn_template.Rd @@ -29,6 +29,6 @@ Download Ocean-Tracking-Network-style metadata templates get_otn_template() # Glider metadata template downloaded to downloads folder -get_otn_template('glider', 'c:/users/myusername/downloads/glider_metadata.xlsx') +get_otn_template("glider", "c:/users/myusername/downloads/glider_metadata.xlsx") } } diff --git a/man/get_project_file.Rd b/man/get_project_file.Rd index 7a679dc..c5435b0 100644 --- a/man/get_project_file.Rd +++ b/man/get_project_file.Rd @@ -41,6 +41,6 @@ conjunction with \code{\link{list_extract_files}} or get_project_file(file = 1, project = 87) # If you know the direct URL to your file, you don't need the file or project names: -get_project_file(url = 'https://matos.asascience.com/projectfile/download/327') +get_project_file(url = "https://matos.asascience.com/projectfile/download/327") } } diff --git a/man/get_tag_search.Rd b/man/get_tag_search.Rd index 0327dd6..e328ca2 100644 --- a/man/get_tag_search.Rd +++ b/man/get_tag_search.Rd @@ -27,8 +27,10 @@ searching over a long period of time. } \examples{ \dontrun{ -get_tag_search(tags = paste0('A69-1601-254', seq(60, 90, 1)), - start_date = '03/01/2016', - end_date = '04/01/2016') +get_tag_search( + tags = paste0("A69-1601-254", seq(60, 90, 1)), + start_date = "03/01/2016", + end_date = "04/01/2016" +) } } diff --git a/man/list_extract_files.Rd b/man/list_extract_files.Rd index 7f1df22..3437271 100644 --- a/man/list_extract_files.Rd +++ b/man/list_extract_files.Rd @@ -55,9 +55,9 @@ are files listed on the \emph{Data Extraction Files} page. list_extract_files(87) # Or, just grab the matched receiver detections -list_files(project = 87, detection_type = 'qualified') +list_files(project = 87, detection_type = "qualified") # OR list files using the project name -list_files('umces boem offshore wind energy') +list_files("umces boem offshore wind energy") } } diff --git a/man/list_project_files.Rd b/man/list_project_files.Rd index 6f7aa7e..d46e7c9 100644 --- a/man/list_project_files.Rd +++ b/man/list_project_files.Rd @@ -53,15 +53,15 @@ of your project page. list_project_files(87) # Or using the project name -list_project_files('umces boem offshore wind energy') +list_project_files("umces boem offshore wind energy") # List only the receiver deployment metadata files -List_project_files(87, 'receiver_metadata') +List_project_files(87, "receiver_metadata") # List both the receiver and transmitter deployment metadata files -List_project_files(87, c('receiver_metadata', 'tag_metadata')) +List_project_files(87, c("receiver_metadata", "tag_metadata")) # Cheat and use shorter names -List_project_files(87, c('receiver', 'tag')) +List_project_files(87, c("receiver", "tag")) } } diff --git a/man/list_projects.Rd b/man/list_projects.Rd index 1e991be..a06b0f8 100644 --- a/man/list_projects.Rd +++ b/man/list_projects.Rd @@ -15,10 +15,13 @@ for which you have file-read permission? Defaults to TRUE, though there is significant speed up if switched to FALSE.} } \description{ -By default, this function scrapes the table found at \url{https://matos.asascience.com/project}. -This table provides not only the full name of the project, but also the MATOS -project number and project page URL. You do not need to log in via \code{matos_login} -or have any permissions to view/download this table. +This function scrapes the table found at \url{https://matos.asascience.com/project} +and combines it with project metadata stored on the +\href{https://members.oceantrack.org/geoserver/web/}{Ocean Tracking Network Geoserver}. +This table provides the full name of the project, collection code, MATOS +project number, MATOS project page URL, project status, full name, citation, +website, project type, area, and abstract. You do not need to log in +via \code{matos_login} or have any permissions to view/download this table. } \examples{ \dontrun{ @@ -26,6 +29,6 @@ or have any permissions to view/download this table. list_projects() # List your projects (which may contain some for which you do not have read access): -list_projects('mine', read_access = F) +list_projects("mine", read_access = F) } } diff --git a/man/matos_logoff.Rd b/man/matos_logoff.Rd index d760fb4..942af1f 100644 --- a/man/matos_logoff.Rd +++ b/man/matos_logoff.Rd @@ -10,5 +10,5 @@ matos_logoff() This function takes no arguments -- just tells MATOS that you want to log out. Useful if you're changing users or on a public computer and would like to protect your projects. } \examples{ - matos_logoff() +matos_logoff() } diff --git a/man/matos_receiver_summary.Rd b/man/matos_receiver_summary.Rd index 54bc294..7394bf5 100644 --- a/man/matos_receiver_summary.Rd +++ b/man/matos_receiver_summary.Rd @@ -48,6 +48,6 @@ matos_receiver_summary(87) matos_receiver_summary(87, deployment = "my_master_deployment_metadata.xlsx") # Get a summary fo what has changed since a particular date: -matos_receiver_summary(87, since = '2022-05-01') +matos_receiver_summary(87, since = "2022-05-01") } } diff --git a/man/matos_tag_summary.Rd b/man/matos_tag_summary.Rd index c0b6a1b..dcc81c7 100644 --- a/man/matos_tag_summary.Rd +++ b/man/matos_tag_summary.Rd @@ -22,6 +22,6 @@ Create summary reports of receiver project data from the OTN data push matos_tag_summary(87) # Or provide an optional date to summarize "What's New". -matos_tag_summary(87, since = '2018-11-01') +matos_tag_summary(87, since = "2018-11-01") } } diff --git a/man/upload_file.Rd b/man/upload_file.Rd index 1ccaae9..1208467 100644 --- a/man/upload_file.Rd +++ b/man/upload_file.Rd @@ -47,19 +47,25 @@ and posted to the same project. \examples{ \dontrun{ # Newly tagged fish, the default -upload_file(87, 'your_tagged_fish.xls') -upload_file(87, 'your_tagged_fish.xls', 'new_tags') +upload_file(87, "your_tagged_fish.xls") +upload_file(87, "your_tagged_fish.xls", "new_tags") # Transmitter detections -upload_file('umces boem offshore wind energy', - 'c:/wherever/your_CSV_detections.csv', - 'detections') -upload_file('umces boem offshore wind energy', - 'c:/wherever/your_VRL_detections.vrl', - 'detections') +upload_file( + "umces boem offshore wind energy", + "c:/wherever/your_CSV_detections.csv", + "detections" +) +upload_file( + "umces boem offshore wind energy", + "c:/wherever/your_VRL_detections.vrl", + "detections" +) # Receiver metadata -upload_file('umces boem offshore wind energy', - 'your_receiver_metadata.xlsx', 'receivers') +upload_file( + "umces boem offshore wind energy", + "your_receiver_metadata.xlsx", "receivers" +) } }