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setup.cfg
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setup.cfg
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[bumpversion]
current_version = 0.36.4
commit = True
tag = True
[metadata]
name = micom
description = Microbial community modeling based on cobrapy.
long_description = file: README.rst
long_description_content_type = text/x-rst
url = https://github.com/micom-dev/micom
author = Christian Diener
author_email = mail@cdiener.com
license = Apache License 2.0
classifiers =
Development Status :: 5 - Production/Stable
Intended Audience :: Science/Research
Topic :: Scientific/Engineering :: Bio-Informatics
License :: OSI Approved :: Apache Software License
Programming Language :: Python :: 3
Programming Language :: Python :: 3.8
Programming Language :: Python :: 3.9
Programming Language :: Python :: 3.10
Programming Language :: Python :: 3.11
keywords =
microbiome
microbiota
modeling
metabolism
community
metabolic modeling
[options]
packages = find:
zip_safe = True
python_requires = >=3.7
install_requires =
pandas>=2.0.0
cobra>=0.29.0
jinja2>=2.10.0
scikit-learn>=1.0
scipy>=1.8.1
symengine>=0.6.1
osqp>=0.6.2
optlang>=1.8.2
highspy>=1.7.2
tests_require =
coverage
pytest
pytest-cov
[options.packages.find]
exclude =
docs
tests
[options.package_data]
micom =
data/*.csv
data/*.gz
data/templates/*.*
data/artifacts/*.*
[bumpversion:file:setup.py]
search = version="{current_version}"
replace = version="{new_version}"
[bumpversion:file:micom/__init__.py]
search = __version__ = "{current_version}"
replace = __version__ = "{new_version}"
[tool:pytest]
filterwarnings =
ignore::DeprecationWarning
ignore::FutureWarning
[bdist_wheel]
universal = 0
[coverage:run]
source = micom
branch = True
[coverage:report]
exclude_lines =
pragma: no cover
def __repr__
if self\.debug
raise AssertionError
raise NotImplementedError
if 0:
if __name__ == .__main__.:
ignore_errors = True
[flake8]
exclude = tests/*, docs/*, versioneer.py, _version.py
max-line-length = 88
ignore =
E203
W503
D202
[pydocstyle]
convention = numpy