Error in mixcr buildLibrary process

[yuyuleung]

Hi,
I am trying to build a custom reference library with IMGT reference. However, I have got following error:

10:10:42.908 INFO - ./mixcr/trust4_mouse_tra_ref.V.json.gz compiled successfully.
Please copy the following information along with the stacktrace:
Version: 4.6.0; built=Sun Dec 10 03:48:42 CST 2023; rev=c9fafa41fe; lib=repseqio.v4.0
OS: Linux
Java: 11.0.13
Cmd args: buildLibrary --debug --v-genes-from-fasta ./mouse_IMGT+C_trav_1line_noGap.fa --v-gene-feature VRegion --j-genes-from-fasta ./mouse_IMGT+C_traj_1line_noGap.fa --j-gene-feature JRegion --c-genes-from-fasta ./mouse_IMGT+C_trac_1line_noGap.fa --c-gene-feature CRegion --chain TRA --taxon-id 10090 --species mouse test_mouse_tra_ref.json.gz
picocli.CommandLine$ExecutionException: Error while running command buildLibrary java.lang.ArrayIndexOutOfBoundsException: Index -1 out of bounds for length 0
at com.milaboratory.mixcr.cli.Main.registerExceptionHandlers$lambda-12(SourceFile:395)
at picocli.CommandLine.execute(CommandLine.java:2088)
at com.milaboratory.mixcr.cli.Main.main(SourceFile:101)
Caused by: java.lang.ArrayIndexOutOfBoundsException: Index -1 out of bounds for length 0
at com.milaboratory.o.jF$j$a.a(SourceFile:1030)
at io.repseq.cli.FromFastaActionAbstract.go(SourceFile:147)
at io.repseq.cli.jcomander.JCommanderBasedMain.main(SourceFile:157)
at io.repseq.cli.Main.main(SourceFile:94)
at com.milaboratory.mixcr.cli.CommandBuildLibrary.fromFasta(SourceFile:362)
at com.milaboratory.mixcr.cli.CommandBuildLibrary.mkLibraryForGeneType(SourceFile:312)
at com.milaboratory.mixcr.cli.CommandBuildLibrary.run1(SourceFile:381)
at com.milaboratory.mixcr.cli.MiXCRCommandWithOutputs.run0(SourceFile:69)
at com.milaboratory.mixcr.cli.MiXCRCommand.run(SourceFile:37)
at picocli.CommandLine.executeUserObject(CommandLine.java:1939)
at picocli.CommandLine.access$1300(CommandLine.java:145)
at picocli.CommandLine$RunLast.executeUserObjectOfLastSubcommandWithSameParent(CommandLine.java:2358)
at picocli.CommandLine$RunLast.handle(CommandLine.java:2352)
at picocli.CommandLine$RunLast.handle(CommandLine.java:2314)
at picocli.CommandLine$AbstractParseResultHandler.execute(CommandLine.java:2179)
at picocli.CommandLine$RunLast.execute(CommandLine.java:2316)
at com.milaboratory.mixcr.cli.Main.registerLogger$lambda-27(SourceFile:514)
at picocli.CommandLine.execute(CommandLine.java:2078)
... 1 more

Following is my input fa.
tra_fa.zip

Thank you so much for checking it.

Yuyu

[yuyuleung]

I have figured out it. Thx. :)