captainAchab_inputs.json

{
  "captainAchab.pythonPath": "String",
  "captainAchab.memory": "Int",
  "captainAchab.perlPath": "String",
  "captainAchab.humanDb": "String",
  "captainAchab.annovarForMpa.CpuHigh": "Int",
  "captainAchab.annovarForMpa.Dbscsnv": "String",
  "captainAchab.filterList": "String",
  "captainAchab.keepFiles": "Boolean",
  "captainAchab.bcftoolsExe": "File",
  "captainAchab.genome": "String",
  "captainAchab.annovarForMpa.Intervar": "String",
  "captainAchab.checkTrio": "String",
  "captainAchab.refAnnotateVariation": "File",
  "captainAchab.cnvGeneList": "String",
  "captainAchab.sampleID": "String",
  "captainAchab.inputVcf": "File",
  "captainAchab.newHope": "Boolean",
  "captainAchab.refVariantsReduction": "File",
  "captainAchab.genesOfInterest": "String",
  "captainAchab.withPhenolyzer": "Boolean",
  "captainAchab.refCodingChange": "File",
  "captainAchab.mpaExe": "File",
  "captainAchab.outDir": "String",
  "captainAchab.mozaicRate": "Float",
  "captainAchab.mozaicDP": "Float",
  "captainAchab.annovarForMpa.SpliceAI": "String",
  "captainAchab.diseaseFile": "String",
  "captainAchab.customVCF": "String",
  "captainAchab.annovarForMpa.GnomadExome": "String",
  "captainAchab.refRetrieveSeqFromFasta": "File",
  "captainAchab.achabExe": "File",
  "captainAchab.caseSample": "String",
  "captainAchab.workflowType": "String",
  "captainAchab.motherSample": "String",
  "captainAchab.vcSuffix": "String (optional, default = \"\")",
  "captainAchab.annovarForMpa.Dollar": "String (optional, default = \"$\")",
  "captainAchab.phenolyzerExe": "String",
  "captainAchab.fastaGenome": "File",
  "captainAchab.cpu": "Int",
  "captainAchab.gatkExe": "File",
  "captainAchab.customXref": "File",
  "captainAchab.annovarForMpa.PopFreqMax": "String",
  "captainAchab.fatherSample": "String",
  "captainAchab.annovarForMpa.Dbnsfp": "String",
  "captainAchab.annovarForMpa.Clinvar": "String",
  "captainAchab.annovarForMpa.GnomadGenome": "String",
  "captainAchab.allelicFrequency": "Float",
  "captainAchab.refConvert2Annovar": "File",
  "captainAchab.tableAnnovarExe": "File",
  "captainAchab.customInfo": "String"
}