From 6e064387ac013ff703e6da9dd816a5c9a6dbb322 Mon Sep 17 00:00:00 2001 From: Aliaksei Chareshneu Date: Thu, 13 Jun 2024 06:52:02 +0000 Subject: [PATCH] add production env --- environment_production.yaml | 60 +++++++++++++++++++++++++++++++++++++ 1 file changed, 60 insertions(+) create mode 100644 environment_production.yaml diff --git a/environment_production.yaml b/environment_production.yaml new file mode 100644 index 00000000..6da7996d --- /dev/null +++ b/environment_production.yaml @@ -0,0 +1,60 @@ +name: cellstar-volume-server-PRODUCTION +channels: + - https://conda.anaconda.org/conda-forge + - https://repo.anaconda.com/pkgs/main + - https://repo.anaconda.com/pkgs/r + - https://repo.anaconda.com/pkgs/msys2 +dependencies: + - python==3.10.0 + - pip + - asgiref==3.5.0 + - dask==2022.2.1 + - fastapi==0.73.0 + - gemmi==0.5.3 + - matplotlib==3.5.1 + - mrcfile==1.4.0 + - numcodecs==0.9.1 + - numpy==1.23.5 + - pytest==7.1.2 + - pytest-asyncio==0.18.3 + - pytest-benchmark==3.4.1 + - scikit-image==0.19.1 + - scipy + - starfile + - starlette==0.17.1 + - uvicorn==0.17.6 + # with 0.59.1 produces warning + - numba==0.58.1 + # there were issues with version of this package + # uncomment if without it it would not work + # - vtk==9.0.3 + - zarr==2.11.1 + - dask-image + - pydantic + - ome-zarr + - jupyterlab + - mkdocs + + - pip: + # - -r requirements.txt + - git+https://github.com/molstar/ciftools-python.git@b074526a8b418bc68d83ae5556a627d2d6ceabdb#egg=ciftools + - sfftk==0.5.5.dev1 + - sfftk-rw==0.7.1 + - SimpleParse @ git+https://github.com/mcfletch/simpleparse.git@57c8d734bdc165581fbacfeecabe25a66c3452a4 + - tensorstore==0.1.18 + - killport + - Pillow + - typer==0.7.0 + - autoflake + - isort + - black + - pyometiff + - nibabel + - seaborn + - -e ./preprocessor + - -e ./db + - -e ./query + - -e ./server + - h5py + - vedo + - mkdocs-material \ No newline at end of file