requirements.txt

# To install required packages in virtual environment:
# cd this_repo
# python3 -m venv venv
# source venv/bin/activate
# pip install -r src/requirements.txt
# save requirements with package versions: pip freeze > official_requirements.txt

# On setting up PyCharm wiht virtualenv: https://stackoverflow.com/questions/33868806/configuring-pycharm-with-existing-virtualenv
# To rename folders: https://askubuntu.com/questions/643098/recursive-directory-renaming

# To solve problems with virtualenv and matplotlib in Mac OS, either do:
# https://markhneedham.com/blog/2018/05/04/python-runtime-error-osx-matplotlib-not-installed-as-framework-mac/
# but does not seem to work (fixes error but figures are all black), or with
# Python3 simply use venv (newer) instead of virtualenv which builds python as a
# framework: https://docs.python.org/3/library/venv.html
# Further: https://github.com/matplotlib/matplotlib/issues/12074

# If no plots showing: sudo apt-get install python3-tk
# import matplotlib
# matplotlib.use('TkAgg')

numpy
scipy
matplotlib
pandas
seaborn
jupyter
sklearn
dill
control
#slycot
pickle5

# Install PyTorch
torch
torchdiffeq
tqdm

# Install https://github.com/aliutkus/torchinterp1d for interpolation with
# pytorch
# cd ../ from src
# git clone https://github.com/aliutkus/torchinterp1d
# cd torchinterp1d
# pip install -e .

# Install PyFMI https://pypi.org/project/PyFMI/
# Needs prior install of cython and FMI Library: https://jmodelica.org/FMILibrary/
# https://stackoverflow.com/questions/40156622/importing-libraries
# export FMIL_HOME=$HOME/build-fmil/2.0.3/ in terminal before installing pyfmi
# Needs prior install of GCC and OMP, in Mac through brew install gcc and brew
# install libomp. Example usage https://jmodelica.org/pyfmi/tutorial.html
#pyfmi

cython
prettytable

pytorch-lightning
#tensorflow
# tensorboard for visualization is included in pytorch-lightning, but seems to
# have problems without tensorflow installed sometimes
# if not found/problems, try: https://stackoverflow.com/questions/45095820/tensorboard-command-not-found
# also try switching browsers/enabling cookies: Firefox seems best...

# https://smt.readthedocs.io/en/latest/index.html
smt