diff --git a/poetry.lock b/poetry.lock
index d5051786f..1e8cf113e 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,10 +1,9 @@
-# This file is automatically @generated by Poetry 1.4.2 and should not be changed by hand.
+# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand.
 
 [[package]]
 name = "adeft"
 version = "0.11.2"
 description = "Acromine based Disambiguation of Entities From Text"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -25,7 +24,6 @@ test = ["pytest", "pytest-cov"]
 name = "aiohttp"
 version = "3.8.4"
 description = "Async http client/server framework (asyncio)"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -134,7 +132,6 @@ speedups = ["Brotli", "aiodns", "cchardet"]
 name = "aiosignal"
 version = "1.3.1"
 description = "aiosignal: a list of registered asynchronous callbacks"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -149,7 +146,6 @@ frozenlist = ">=1.1.0"
 name = "airium"
 version = "0.2.5"
 description = "Easy and quick html builder with natural syntax correspondence (python->html). No templates needed. Serves pure pythonic library with no dependencies."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -165,7 +161,6 @@ parse = ["beautifulsoup4 (>=4.10,<5.0)", "requests (>=2.12,<3)"]
 name = "alabaster"
 version = "0.7.13"
 description = "A configurable sidebar-enabled Sphinx theme"
-category = "main"
 optional = true
 python-versions = ">=3.6"
 files = [
@@ -177,7 +172,6 @@ files = [
 name = "altair"
 version = "4.2.2"
 description = "Altair: A declarative statistical visualization library for Python."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -200,7 +194,6 @@ dev = ["black", "docutils", "flake8", "ipython", "m2r", "mistune (<2.0.0)", "pyt
 name = "aniso8601"
 version = "9.0.1"
 description = "A library for parsing ISO 8601 strings."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -215,7 +208,6 @@ dev = ["black", "coverage", "isort", "pre-commit", "pyenchant", "pylint"]
 name = "annotated-types"
 version = "0.5.0"
 description = "Reusable constraint types to use with typing.Annotated"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -227,7 +219,6 @@ files = [
 name = "ansiwrap"
 version = "0.8.4"
 description = "textwrap, but savvy to ANSI colors and styles"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -242,7 +233,6 @@ textwrap3 = ">=0.9.2"
 name = "antlr4-python3-runtime"
 version = "4.9.3"
 description = "ANTLR 4.9.3 runtime for Python 3.7"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -253,7 +243,6 @@ files = [
 name = "anyio"
 version = "3.6.2"
 description = "High level compatibility layer for multiple asynchronous event loop implementations"
-category = "main"
 optional = false
 python-versions = ">=3.6.2"
 files = [
@@ -274,7 +263,6 @@ trio = ["trio (>=0.16,<0.22)"]
 name = "appdirs"
 version = "1.4.4"
 description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -286,7 +274,6 @@ files = [
 name = "appnope"
 version = "0.1.3"
 description = "Disable App Nap on macOS >= 10.9"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -298,7 +285,6 @@ files = [
 name = "argcomplete"
 version = "3.0.8"
 description = "Bash tab completion for argparse"
-category = "main"
 optional = true
 python-versions = ">=3.6"
 files = [
@@ -313,7 +299,6 @@ test = ["coverage", "mypy", "pexpect", "ruff", "wheel"]
 name = "argon2-cffi"
 version = "21.3.0"
 description = "The secure Argon2 password hashing algorithm."
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -333,7 +318,6 @@ tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pytest"]
 name = "argon2-cffi-bindings"
 version = "21.2.0"
 description = "Low-level CFFI bindings for Argon2"
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -371,7 +355,6 @@ tests = ["pytest"]
 name = "arrow"
 version = "1.2.3"
 description = "Better dates & times for Python"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -386,7 +369,6 @@ python-dateutil = ">=2.7.0"
 name = "asttokens"
 version = "2.2.1"
 description = "Annotate AST trees with source code positions"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -404,7 +386,6 @@ test = ["astroid", "pytest"]
 name = "async-timeout"
 version = "4.0.2"
 description = "Timeout context manager for asyncio programs"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -416,7 +397,6 @@ files = [
 name = "attrs"
 version = "22.2.0"
 description = "Classes Without Boilerplate"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -435,7 +415,6 @@ tests-no-zope = ["cloudpickle", "cloudpickle", "hypothesis", "hypothesis", "mypy
 name = "babel"
 version = "2.11.0"
 description = "Internationalization utilities"
-category = "main"
 optional = true
 python-versions = ">=3.6"
 files = [
@@ -450,7 +429,6 @@ pytz = ">=2015.7"
 name = "backcall"
 version = "0.2.0"
 description = "Specifications for callback functions passed in to an API"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -462,7 +440,6 @@ files = [
 name = "bcp47"
 version = "0.0.4"
 description = "Language tags made easy"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -474,7 +451,6 @@ files = [
 name = "beautifulsoup4"
 version = "4.11.2"
 description = "Screen-scraping library"
-category = "main"
 optional = false
 python-versions = ">=3.6.0"
 files = [
@@ -493,7 +469,6 @@ lxml = ["lxml"]
 name = "bioc"
 version = "2.0.post5"
 description = "bioc - Processing BioC, Brat, and PubTator with Python"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -514,7 +489,6 @@ rest = ["docutils (>=0.15.2)"]
 name = "bleach"
 version = "6.0.0"
 description = "An easy safelist-based HTML-sanitizing tool."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -533,7 +507,6 @@ css = ["tinycss2 (>=1.1.0,<1.2)"]
 name = "blinker"
 version = "1.6.2"
 description = "Fast, simple object-to-object and broadcast signaling"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -545,7 +518,6 @@ files = [
 name = "boto3"
 version = "1.26.63"
 description = "The AWS SDK for Python"
-category = "main"
 optional = false
 python-versions = ">= 3.7"
 files = [
@@ -565,7 +537,6 @@ crt = ["botocore[crt] (>=1.21.0,<2.0a0)"]
 name = "botocore"
 version = "1.29.63"
 description = "Low-level, data-driven core of boto 3."
-category = "main"
 optional = false
 python-versions = ">= 3.7"
 files = [
@@ -585,7 +556,6 @@ crt = ["awscrt (==0.15.3)"]
 name = "cachetools"
 version = "5.3.0"
 description = "Extensible memoizing collections and decorators"
-category = "main"
 optional = false
 python-versions = "~=3.7"
 files = [
@@ -597,7 +567,6 @@ files = [
 name = "cachier"
 version = "2.1.0"
 description = "Persistent, stale-free, local and cross-machine caching for Python functions."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -618,7 +587,6 @@ test = ["bandit", "collective.checkdocs", "coverage", "dnspython", "flake8", "pa
 name = "cattrs"
 version = "22.2.0"
 description = "Composable complex class support for attrs and dataclasses."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -634,7 +602,6 @@ exceptiongroup = {version = "*", markers = "python_version < \"3.11\""}
 name = "certifi"
 version = "2022.12.7"
 description = "Python package for providing Mozilla's CA Bundle."
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -646,7 +613,6 @@ files = [
 name = "cffi"
 version = "1.15.1"
 description = "Foreign Function Interface for Python calling C code."
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -723,7 +689,6 @@ pycparser = "*"
 name = "cfgraph"
 version = "0.2.1"
 description = "rdflib collections flattening graph"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -737,7 +702,6 @@ rdflib = ">=0.4.2"
 name = "chardet"
 version = "5.1.0"
 description = "Universal encoding detector for Python 3"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -749,7 +713,6 @@ files = [
 name = "charset-normalizer"
 version = "3.0.1"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -847,7 +810,6 @@ files = [
 name = "class-resolver"
 version = "0.4.2"
 description = "Lookup and instantiate classes with style."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -874,7 +836,6 @@ torch-geometric = ["torch", "torch-geometric", "torch-sparse"]
 name = "click"
 version = "8.1.6"
 description = "Composable command line interface toolkit"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -889,7 +850,6 @@ colorama = {version = "*", markers = "platform_system == \"Windows\""}
 name = "click-default-group-wheel"
 version = "1.2.2"
 description = "Extends click.Group to invoke a command without explicit subcommand name (packaged as a wheel)"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -904,7 +864,6 @@ click = "*"
 name = "colorama"
 version = "0.4.6"
 description = "Cross-platform colored terminal text."
-category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
 files = [
@@ -916,7 +875,6 @@ files = [
 name = "comm"
 version = "0.1.3"
 description = "Jupyter Python Comm implementation, for usage in ipykernel, xeus-python etc."
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -936,7 +894,6 @@ typing = ["mypy (>=0.990)"]
 name = "contourpy"
 version = "1.0.7"
 description = "Python library for calculating contours of 2D quadrilateral grids"
-category = "dev"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -1011,7 +968,6 @@ test-no-images = ["pytest"]
 name = "curies"
 version = "0.6.0"
 description = "Idiomatic conversion between URIs and compact URIs (CURIEs)."
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -1036,7 +992,6 @@ tests = ["coverage", "pytest"]
 name = "cycler"
 version = "0.11.0"
 description = "Composable style cycles"
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1048,7 +1003,6 @@ files = [
 name = "debugpy"
 version = "1.6.7"
 description = "An implementation of the Debug Adapter Protocol for Python"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1076,7 +1030,6 @@ files = [
 name = "decorator"
 version = "5.1.1"
 description = "Decorators for Humans"
-category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -1088,7 +1041,6 @@ files = [
 name = "defusedxml"
 version = "0.7.1"
 description = "XML bomb protection for Python stdlib modules"
-category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -1100,7 +1052,6 @@ files = [
 name = "deprecated"
 version = "1.2.13"
 description = "Python @deprecated decorator to deprecate old python classes, functions or methods."
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -1118,7 +1069,6 @@ dev = ["PyTest", "PyTest (<5)", "PyTest-Cov", "PyTest-Cov (<2.6)", "bump2version
 name = "deprecation"
 version = "2.1.0"
 description = "A library to handle automated deprecations"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1131,21 +1081,19 @@ packaging = "*"
 
 [[package]]
 name = "distlib"
-version = "0.3.6"
+version = "0.3.7"
 description = "Distribution utilities"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
-    {file = "distlib-0.3.6-py2.py3-none-any.whl", hash = "sha256:f35c4b692542ca110de7ef0bea44d73981caeb34ca0b9b6b2e6d7790dda8f80e"},
-    {file = "distlib-0.3.6.tar.gz", hash = "sha256:14bad2d9b04d3a36127ac97f30b12a19268f211063d8f8ee4f47108896e11b46"},
+    {file = "distlib-0.3.7-py2.py3-none-any.whl", hash = "sha256:2e24928bc811348f0feb63014e97aaae3037f2cf48712d51ae61df7fd6075057"},
+    {file = "distlib-0.3.7.tar.gz", hash = "sha256:9dafe54b34a028eafd95039d5e5d4851a13734540f1331060d31c9916e7147a8"},
 ]
 
 [[package]]
 name = "docutils"
 version = "0.17.1"
 description = "Docutils -- Python Documentation Utilities"
-category = "main"
 optional = true
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -1157,7 +1105,6 @@ files = [
 name = "docx2txt"
 version = "0.8"
 description = "A pure python-based utility to extract text and images from docx files."
-category = "main"
 optional = true
 python-versions = "*"
 files = [
@@ -1168,7 +1115,6 @@ files = [
 name = "dominate"
 version = "2.7.0"
 description = "Dominate is a Python library for creating and manipulating HTML documents using an elegant DOM API."
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -1180,7 +1126,6 @@ files = [
 name = "ebooklib"
 version = "0.18"
 description = "Ebook library which can handle EPUB2/EPUB3 and Kindle format"
-category = "main"
 optional = true
 python-versions = "*"
 files = [
@@ -1195,7 +1140,6 @@ six = "*"
 name = "editorconfig"
 version = "0.12.3"
 description = "EditorConfig File Locator and Interpreter for Python"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1207,7 +1151,6 @@ files = [
 name = "entrypoints"
 version = "0.4"
 description = "Discover and load entry points from installed packages."
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1219,7 +1162,6 @@ files = [
 name = "et-xmlfile"
 version = "1.1.0"
 description = "An implementation of lxml.xmlfile for the standard library"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1231,7 +1173,6 @@ files = [
 name = "eutils"
 version = "0.6.0"
 description = "\"Python interface to NCBI's eutilities API\""
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1251,7 +1192,6 @@ dev = ["flake8", "ipython", "mock", "pytest", "pytest-cov", "restview", "setupto
 name = "exceptiongroup"
 version = "1.1.0"
 description = "Backport of PEP 654 (exception groups)"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1266,7 +1206,6 @@ test = ["pytest (>=6)"]
 name = "executing"
 version = "1.2.0"
 description = "Get the currently executing AST node of a frame, and other information"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -1281,7 +1220,6 @@ tests = ["asttokens", "littleutils", "pytest", "rich"]
 name = "extruct"
 version = "0.14.0"
 description = "Extract embedded metadata from HTML markup"
-category = "main"
 optional = true
 python-versions = "*"
 files = [
@@ -1306,7 +1244,6 @@ cli = ["requests"]
 name = "fastapi"
 version = "0.100.1"
 description = "FastAPI framework, high performance, easy to learn, fast to code, ready for production"
-category = "main"
 optional = true
 python-versions = ">=3.7"
 files = [
@@ -1326,7 +1263,6 @@ all = ["email-validator (>=2.0.0)", "httpx (>=0.23.0)", "itsdangerous (>=1.1.0)"
 name = "fastjsonschema"
 version = "2.16.3"
 description = "Fastest Python implementation of JSON schema"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -1341,7 +1277,6 @@ devel = ["colorama", "json-spec", "jsonschema", "pylint", "pytest", "pytest-benc
 name = "fastobo"
 version = "0.12.2"
 description = "Faultless AST for Open Biomedical Ontologies in Python."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1386,25 +1321,23 @@ files = [
 
 [[package]]
 name = "filelock"
-version = "3.9.0"
+version = "3.12.2"
 description = "A platform independent file lock."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "filelock-3.9.0-py3-none-any.whl", hash = "sha256:f58d535af89bb9ad5cd4df046f741f8553a418c01a7856bf0d173bbc9f6bd16d"},
-    {file = "filelock-3.9.0.tar.gz", hash = "sha256:7b319f24340b51f55a2bf7a12ac0755a9b03e718311dac567a0f4f7fabd2f5de"},
+    {file = "filelock-3.12.2-py3-none-any.whl", hash = "sha256:cbb791cdea2a72f23da6ac5b5269ab0a0d161e9ef0100e653b69049a7706d1ec"},
+    {file = "filelock-3.12.2.tar.gz", hash = "sha256:002740518d8aa59a26b0c76e10fb8c6e15eae825d34b6fdf670333fd7b938d81"},
 ]
 
 [package.extras]
-docs = ["furo (>=2022.12.7)", "sphinx (>=5.3)", "sphinx-autodoc-typehints (>=1.19.5)"]
-testing = ["covdefaults (>=2.2.2)", "coverage (>=7.0.1)", "pytest (>=7.2)", "pytest-cov (>=4)", "pytest-timeout (>=2.1)"]
+docs = ["furo (>=2023.5.20)", "sphinx (>=7.0.1)", "sphinx-autodoc-typehints (>=1.23,!=1.23.4)"]
+testing = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "diff-cover (>=7.5)", "pytest (>=7.3.1)", "pytest-cov (>=4.1)", "pytest-mock (>=3.10)", "pytest-timeout (>=2.1)"]
 
 [[package]]
 name = "flask"
 version = "2.1.3"
 description = "A simple framework for building complex web applications."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1427,7 +1360,6 @@ dotenv = ["python-dotenv"]
 name = "flask-bootstrap"
 version = "3.3.7.1"
 description = "An extension that includes Bootstrap in your project, without any boilerplate code."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1443,7 +1375,6 @@ visitor = "*"
 name = "flask-restx"
 version = "1.0.5"
 description = "Fully featured framework for fast, easy and documented API development with Flask"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1467,7 +1398,6 @@ test = ["Faker (==2.0.0)", "blinker", "invoke (==1.7.3)", "mock (==3.0.5)", "pyt
 name = "flask-wtf"
 version = "1.1.1"
 description = "Form rendering, validation, and CSRF protection for Flask with WTForms."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1487,7 +1417,6 @@ email = ["email-validator"]
 name = "fonttools"
 version = "4.39.3"
 description = "Tools to manipulate font files"
-category = "dev"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -1513,7 +1442,6 @@ woff = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "zopfli (>=0.1.4)"]
 name = "fqdn"
 version = "1.5.1"
 description = "Validates fully-qualified domain names against RFC 1123, so that they are acceptable to modern bowsers"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0, !=3.1, !=3.2, !=3.3, !=3.4, <4"
 files = [
@@ -1525,7 +1453,6 @@ files = [
 name = "frozenlist"
 version = "1.3.3"
 description = "A list-like structure which implements collections.abc.MutableSequence"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1609,7 +1536,6 @@ files = [
 name = "fsspec"
 version = "2023.6.0"
 description = "File-system specification"
-category = "main"
 optional = true
 python-versions = ">=3.8"
 files = [
@@ -1645,7 +1571,6 @@ tqdm = ["tqdm"]
 name = "funowl"
 version = "0.2.3"
 description = "Python rendering of the OWL Functional syntax"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1665,7 +1590,6 @@ rfc3987 = "*"
 name = "furo"
 version = "2022.12.7"
 description = "A clean customisable Sphinx documentation theme."
-category = "main"
 optional = true
 python-versions = ">=3.7"
 files = [
@@ -1683,7 +1607,6 @@ sphinx-basic-ng = "*"
 name = "ghp-import"
 version = "2.1.0"
 description = "Copy your docs directly to the gh-pages branch."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1701,7 +1624,6 @@ dev = ["flake8", "markdown", "twine", "wheel"]
 name = "gilda"
 version = "1.0.0"
 description = "Grounding for biomedical entities with contextual disambiguation"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1731,7 +1653,6 @@ test = ["pandas", "pytest", "pytest-cov"]
 name = "gitdb"
 version = "4.0.10"
 description = "Git Object Database"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1746,7 +1667,6 @@ smmap = ">=3.0.1,<6"
 name = "gitpython"
 version = "3.1.31"
 description = "GitPython is a Python library used to interact with Git repositories"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1761,7 +1681,6 @@ gitdb = ">=4.0.1,<5"
 name = "gpt4"
 version = "0.0.1"
 description = "A CLI for chatting with OpenAI's API."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1777,7 +1696,6 @@ requests = "*"
 name = "gpt4all"
 version = "1.0.8"
 description = "Python bindings for GPT4All"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -1797,7 +1715,6 @@ dev = ["black", "isort", "mkautodoc", "mkdocs-jupyter", "mkdocs-material", "mkdo
 name = "graphviz"
 version = "0.20.1"
 description = "Simple Python interface for Graphviz"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1814,7 +1731,6 @@ test = ["coverage", "mock (>=4)", "pytest (>=7)", "pytest-cov", "pytest-mock (>=
 name = "greenlet"
 version = "2.0.1"
 description = "Lightweight in-process concurrent programming"
-category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*"
 files = [
@@ -1888,7 +1804,6 @@ test = ["faulthandler", "objgraph", "psutil"]
 name = "h11"
 version = "0.14.0"
 description = "A pure-Python, bring-your-own-I/O implementation of HTTP/1.1"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1900,7 +1815,6 @@ files = [
 name = "hbreader"
 version = "0.9.1"
 description = "Honey Badger reader - a generic file/url/string open and read tool"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1912,7 +1826,6 @@ files = [
 name = "html-text"
 version = "0.5.2"
 description = "Extract text from HTML"
-category = "main"
 optional = true
 python-versions = "*"
 files = [
@@ -1927,7 +1840,6 @@ lxml = "*"
 name = "html5lib"
 version = "1.1"
 description = "HTML parser based on the WHATWG HTML specification"
-category = "main"
 optional = true
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -1949,7 +1861,6 @@ lxml = ["lxml"]
 name = "httpcore"
 version = "0.16.3"
 description = "A minimal low-level HTTP client."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1961,17 +1872,16 @@ files = [
 anyio = ">=3.0,<5.0"
 certifi = "*"
 h11 = ">=0.13,<0.15"
-sniffio = ">=1.0.0,<2.0.0"
+sniffio = "==1.*"
 
 [package.extras]
 http2 = ["h2 (>=3,<5)"]
-socks = ["socksio (>=1.0.0,<2.0.0)"]
+socks = ["socksio (==1.*)"]
 
 [[package]]
 name = "httpx"
 version = "0.23.3"
 description = "The next generation HTTP client."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1987,15 +1897,14 @@ sniffio = "*"
 
 [package.extras]
 brotli = ["brotli", "brotlicffi"]
-cli = ["click (>=8.0.0,<9.0.0)", "pygments (>=2.0.0,<3.0.0)", "rich (>=10,<13)"]
+cli = ["click (==8.*)", "pygments (==2.*)", "rich (>=10,<13)"]
 http2 = ["h2 (>=3,<5)"]
-socks = ["socksio (>=1.0.0,<2.0.0)"]
+socks = ["socksio (==1.*)"]
 
 [[package]]
 name = "huggingface-hub"
 version = "0.15.1"
 description = "Client library to download and publish models, datasets and other repos on the huggingface.co hub"
-category = "main"
 optional = true
 python-versions = ">=3.7.0"
 files = [
@@ -2027,7 +1936,6 @@ typing = ["types-PyYAML", "types-requests", "types-simplejson", "types-toml", "t
 name = "idna"
 version = "3.4"
 description = "Internationalized Domain Names in Applications (IDNA)"
-category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -2039,7 +1947,6 @@ files = [
 name = "ijson"
 version = "3.2.0.post0"
 description = "Iterative JSON parser with standard Python iterator interfaces"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2127,7 +2034,6 @@ files = [
 name = "imagesize"
 version = "1.4.1"
 description = "Getting image size from png/jpeg/jpeg2000/gif file"
-category = "main"
 optional = true
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -2139,7 +2045,6 @@ files = [
 name = "importlib-metadata"
 version = "6.8.0"
 description = "Read metadata from Python packages"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -2159,7 +2064,6 @@ testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs
 name = "importlib-resources"
 version = "5.12.0"
 description = "Read resources from Python packages"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2178,7 +2082,6 @@ testing = ["flake8 (<5)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-chec
 name = "inflect"
 version = "6.0.2"
 description = "Correctly generate plurals, singular nouns, ordinals, indefinite articles; convert numbers to words"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2197,7 +2100,6 @@ testing = ["flake8 (<5)", "pygments", "pytest (>=6)", "pytest-black (>=0.3.7)",
 name = "inflection"
 version = "0.5.1"
 description = "A port of Ruby on Rails inflector to Python"
-category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -2209,7 +2111,6 @@ files = [
 name = "iniconfig"
 version = "2.0.0"
 description = "brain-dead simple config-ini parsing"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2221,7 +2122,6 @@ files = [
 name = "intervaltree"
 version = "3.1.0"
 description = "Editable interval tree data structure for Python 2 and 3"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2235,7 +2135,6 @@ sortedcontainers = ">=2.0,<3.0"
 name = "ipykernel"
 version = "6.22.0"
 description = "IPython Kernel for Jupyter"
-category = "dev"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -2249,7 +2148,7 @@ comm = ">=0.1.1"
 debugpy = ">=1.6.5"
 ipython = ">=7.23.1"
 jupyter-client = ">=6.1.12"
-jupyter-core = ">=4.12,<5.0.0 || >=5.1.0"
+jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0"
 matplotlib-inline = ">=0.1"
 nest-asyncio = "*"
 packaging = "*"
@@ -2269,7 +2168,6 @@ test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=7.0)", "pytest-asyncio"
 name = "ipython"
 version = "8.12.0"
 description = "IPython: Productive Interactive Computing"
-category = "dev"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -2309,7 +2207,6 @@ test-extra = ["curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.21)", "pa
 name = "ipython-genutils"
 version = "0.2.0"
 description = "Vestigial utilities from IPython"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -2321,7 +2218,6 @@ files = [
 name = "ipywidgets"
 version = "8.0.6"
 description = "Jupyter interactive widgets"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2343,7 +2239,6 @@ test = ["ipykernel", "jsonschema", "pytest (>=3.6.0)", "pytest-cov", "pytz"]
 name = "isodate"
 version = "0.6.1"
 description = "An ISO 8601 date/time/duration parser and formatter"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2358,7 +2253,6 @@ six = "*"
 name = "isoduration"
 version = "20.11.0"
 description = "Operations with ISO 8601 durations"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2373,7 +2267,6 @@ arrow = ">=0.15.0"
 name = "itsdangerous"
 version = "2.1.2"
 description = "Safely pass data to untrusted environments and back."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2385,7 +2278,6 @@ files = [
 name = "jedi"
 version = "0.18.2"
 description = "An autocompletion tool for Python that can be used for text editors."
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -2405,7 +2297,6 @@ testing = ["Django (<3.1)", "attrs", "colorama", "docopt", "pytest (<7.0.0)"]
 name = "jinja2"
 version = "3.1.2"
 description = "A very fast and expressive template engine."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2423,7 +2314,6 @@ i18n = ["Babel (>=2.7)"]
 name = "jmespath"
 version = "1.0.1"
 description = "JSON Matching Expressions"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2435,7 +2325,6 @@ files = [
 name = "joblib"
 version = "1.2.0"
 description = "Lightweight pipelining with Python functions"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2447,7 +2336,6 @@ files = [
 name = "jsbeautifier"
 version = "1.14.7"
 description = "JavaScript unobfuscator and beautifier."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2462,7 +2350,6 @@ six = ">=1.13.0"
 name = "json-flattener"
 version = "0.1.9"
 description = "Python library for denormalizing nested dicts or json objects to tables and back"
-category = "main"
 optional = false
 python-versions = ">=3.7.0"
 files = [
@@ -2478,7 +2365,6 @@ pyyaml = "*"
 name = "jsonasobj"
 version = "1.3.1"
 description = "JSON as python objects"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2490,7 +2376,6 @@ files = [
 name = "jsonasobj2"
 version = "1.0.4"
 description = "JSON as python objects - version 2"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -2505,7 +2390,6 @@ hbreader = "*"
 name = "jsonlines"
 version = "3.1.0"
 description = "Library with helpers for the jsonlines file format"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -2520,7 +2404,6 @@ attrs = ">=19.2.0"
 name = "jsonpatch"
 version = "1.33"
 description = "Apply JSON-Patches (RFC 6902)"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, !=3.6.*"
 files = [
@@ -2535,7 +2418,6 @@ jsonpointer = ">=1.9"
 name = "jsonpath-ng"
 version = "1.5.3"
 description = "A final implementation of JSONPath for Python that aims to be standard compliant, including arithmetic and binary comparison operators and providing clear AST for metaprogramming."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2553,7 +2435,6 @@ six = "*"
 name = "jsonpointer"
 version = "2.3"
 description = "Identify specific nodes in a JSON document (RFC 6901)"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -2565,7 +2446,6 @@ files = [
 name = "jsonschema"
 version = "4.17.3"
 description = "An implementation of JSON Schema validation for Python"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2594,7 +2474,6 @@ format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-
 name = "jstyleson"
 version = "0.0.2"
 description = "Library to parse JSON with js-style comments."
-category = "main"
 optional = true
 python-versions = "*"
 files = [
@@ -2605,7 +2484,6 @@ files = [
 name = "jupyter"
 version = "1.0.0"
 description = "Jupyter metapackage. Install all the Jupyter components in one go."
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -2626,7 +2504,6 @@ qtconsole = "*"
 name = "jupyter-client"
 version = "8.1.0"
 description = "Jupyter protocol implementation and client libraries"
-category = "dev"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -2636,7 +2513,7 @@ files = [
 
 [package.dependencies]
 importlib-metadata = {version = ">=4.8.3", markers = "python_version < \"3.10\""}
-jupyter-core = ">=4.12,<5.0.0 || >=5.1.0"
+jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0"
 python-dateutil = ">=2.8.2"
 pyzmq = ">=23.0"
 tornado = ">=6.2"
@@ -2650,7 +2527,6 @@ test = ["codecov", "coverage", "ipykernel (>=6.14)", "mypy", "paramiko", "pre-co
 name = "jupyter-console"
 version = "6.6.3"
 description = "Jupyter terminal console"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2662,7 +2538,7 @@ files = [
 ipykernel = ">=6.14"
 ipython = "*"
 jupyter-client = ">=7.0.0"
-jupyter-core = ">=4.12,<5.0.0 || >=5.1.0"
+jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0"
 prompt-toolkit = ">=3.0.30"
 pygments = "*"
 pyzmq = ">=17"
@@ -2675,7 +2551,6 @@ test = ["flaky", "pexpect", "pytest"]
 name = "jupyter-core"
 version = "5.3.0"
 description = "Jupyter core package. A base package on which Jupyter projects rely."
-category = "dev"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -2696,7 +2571,6 @@ test = ["ipykernel", "pre-commit", "pytest", "pytest-cov", "pytest-timeout"]
 name = "jupyter-events"
 version = "0.6.3"
 description = "Jupyter Event System library"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2721,7 +2595,6 @@ test = ["click", "coverage", "pre-commit", "pytest (>=7.0)", "pytest-asyncio (>=
 name = "jupyter-server"
 version = "2.5.0"
 description = "The backend—i.e. core services, APIs, and REST endpoints—to Jupyter web applications."
-category = "dev"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -2734,7 +2607,7 @@ anyio = ">=3.1.0"
 argon2-cffi = "*"
 jinja2 = "*"
 jupyter-client = ">=7.4.4"
-jupyter-core = ">=4.12,<5.0.0 || >=5.1.0"
+jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0"
 jupyter-events = ">=0.4.0"
 jupyter-server-terminals = "*"
 nbconvert = ">=6.4.4"
@@ -2757,7 +2630,6 @@ test = ["ipykernel", "pre-commit", "pytest (>=7.0)", "pytest-console-scripts", "
 name = "jupyter-server-terminals"
 version = "0.4.4"
 description = "A Jupyter Server Extension Providing Terminals."
-category = "dev"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -2777,7 +2649,6 @@ test = ["coverage", "jupyter-server (>=2.0.0)", "pytest (>=7.0)", "pytest-cov",
 name = "jupyterlab-pygments"
 version = "0.2.2"
 description = "Pygments theme using JupyterLab CSS variables"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2789,7 +2660,6 @@ files = [
 name = "jupyterlab-widgets"
 version = "3.0.7"
 description = "Jupyter interactive widgets for JupyterLab"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2801,7 +2671,6 @@ files = [
 name = "kgcl-rdflib"
 version = "0.5.0"
 description = "Schema for the KGCL project."
-category = "main"
 optional = false
 python-versions = ">=3.8,<4.0"
 files = [
@@ -2817,7 +2686,6 @@ linkml-runtime = ">=1.1.24"
 name = "kgcl-schema"
 version = "0.6.0"
 description = "Schema for the KGCL project."
-category = "main"
 optional = false
 python-versions = ">=3.8,<4.0"
 files = [
@@ -2835,7 +2703,6 @@ prefixmaps = ">=0.1.5,<0.2.0"
 name = "kiwisolver"
 version = "1.4.4"
 description = "A fast implementation of the Cassowary constraint solver"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2913,7 +2780,6 @@ files = [
 name = "lark"
 version = "1.1.5"
 description = "a modern parsing library"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2928,14 +2794,13 @@ regex = ["regex"]
 
 [[package]]
 name = "linkml"
-version = "1.5.6"
+version = "1.5.7"
 description = "Linked Open Data Modeling Language"
-category = "main"
 optional = false
 python-versions = ">=3.7.6,<4.0.0"
 files = [
-    {file = "linkml-1.5.6-py3-none-any.whl", hash = "sha256:8036d9ead98d0bf61017e5a2db32ca5b752ab32e338c796c4780118f37293d44"},
-    {file = "linkml-1.5.6.tar.gz", hash = "sha256:54b34ad376c3146eb714e961118ac2a02720ac315d8ab76ca802e5dc479b25fb"},
+    {file = "linkml-1.5.7-py3-none-any.whl", hash = "sha256:677f4c5809dc51b151b86accc69e77482ad86b9c1326a212cef9b4a2a9a96c10"},
+    {file = "linkml-1.5.7.tar.gz", hash = "sha256:bca3dd56837ced79749656843e1e20b8d1db1a89287e7b29d1ee145e4a75ad4d"},
 ]
 
 [package.dependencies]
@@ -2968,7 +2833,6 @@ watchdog = ">=0.9.0"
 name = "linkml-dataops"
 version = "0.1.0"
 description = "LinkML Data Operations API"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2987,7 +2851,6 @@ linkml-runtime = ">=1.1.6"
 name = "linkml-owl"
 version = "0.3.0"
 description = "OWL mappings for Linked Open Data Modeling Language"
-category = "main"
 optional = false
 python-versions = ">=3.8,<4.0"
 files = [
@@ -3006,7 +2869,6 @@ linkml-runtime = ">=1.3.4"
 name = "linkml-renderer"
 version = "0.3.0"
 description = "linkml-renderer"
-category = "main"
 optional = false
 python-versions = ">=3.8,<4.0"
 files = [
@@ -3024,7 +2886,6 @@ pydantic = "*"
 name = "linkml-runtime"
 version = "1.5.6"
 description = "Runtime environment for LinkML, the Linked open data modeling language"
-category = "main"
 optional = false
 python-versions = ">=3.7.6,<4.0.0"
 files = [
@@ -3049,14 +2910,13 @@ requests = "*"
 
 [[package]]
 name = "llm"
-version = "0.6.1"
+version = "0.8"
 description = "A CLI utility and Python library for interacting with Large Language Models, including OpenAI, PaLM and local models installed on your own machine."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "llm-0.6.1-py3-none-any.whl", hash = "sha256:76cc4dff0cb7951d55b37c6c347a2717ce9bc7bb9700af54fab4fd24ce4c1411"},
-    {file = "llm-0.6.1.tar.gz", hash = "sha256:f4470292202abb57871b6ee373c1397b9da6271044094b01afd8efdb7f0770ca"},
+    {file = "llm-0.8-py3-none-any.whl", hash = "sha256:9867376b2d5581e82647ec5e7815f13d9fc236cdc358d3057ba814837dfaf7e6"},
+    {file = "llm-0.8.tar.gz", hash = "sha256:551020e3b5b34f4fd9f753708b93f5c46c05d43b92783ab8f38c7579a299feaf"},
 ]
 
 [package.dependencies]
@@ -3065,11 +2925,11 @@ click-default-group-wheel = "*"
 openai = "*"
 pip = "*"
 pluggy = "*"
-pydantic = ">=2.0.0"
+pydantic = ">=1.10.2"
 python-ulid = "*"
 PyYAML = "*"
 setuptools = "*"
-sqlite-utils = "*"
+sqlite-utils = ">=3.35.0"
 
 [package.extras]
 test = ["black", "cogapp", "mypy", "pytest", "requests-mock", "ruff", "types-PyYAML", "types-click", "types-requests"]
@@ -3078,7 +2938,6 @@ test = ["black", "cogapp", "mypy", "pytest", "requests-mock", "ruff", "types-PyY
 name = "llm-gpt4all"
 version = "0.1.1"
 description = "Plugin for LLM adding support for GPT4ALL models"
-category = "main"
 optional = false
 python-versions = ">=3.9"
 files = [
@@ -3098,7 +2957,6 @@ test = ["pytest"]
 name = "lxml"
 version = "4.9.2"
 description = "Powerful and Pythonic XML processing library combining libxml2/libxslt with the ElementTree API."
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, != 3.4.*"
 files = [
@@ -3191,7 +3049,6 @@ source = ["Cython (>=0.29.7)"]
 name = "markdown"
 version = "3.3.7"
 description = "Python implementation of Markdown."
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -3209,7 +3066,6 @@ testing = ["coverage", "pyyaml"]
 name = "markdown-it-py"
 version = "2.1.0"
 description = "Python port of markdown-it. Markdown parsing, done right!"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3234,7 +3090,6 @@ testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"]
 name = "markupsafe"
 version = "2.1.2"
 description = "Safely add untrusted strings to HTML/XML markup."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3294,7 +3149,6 @@ files = [
 name = "matplotlib"
 version = "3.7.1"
 description = "Python plotting package"
-category = "dev"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -3357,7 +3211,6 @@ python-dateutil = ">=2.7"
 name = "matplotlib-inline"
 version = "0.1.6"
 description = "Inline Matplotlib backend for Jupyter"
-category = "dev"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -3372,7 +3225,6 @@ traitlets = "*"
 name = "mdit-py-plugins"
 version = "0.3.3"
 description = "Collection of plugins for markdown-it-py"
-category = "main"
 optional = true
 python-versions = ">=3.7"
 files = [
@@ -3392,7 +3244,6 @@ testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"]
 name = "mdurl"
 version = "0.1.2"
 description = "Markdown URL utilities"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3404,7 +3255,6 @@ files = [
 name = "mergedeep"
 version = "1.3.4"
 description = "A deep merge function for 🐍."
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -3416,7 +3266,6 @@ files = [
 name = "mf2py"
 version = "1.1.2"
 description = "Python Microformats2 parser"
-category = "main"
 optional = true
 python-versions = "*"
 files = [
@@ -3432,7 +3281,6 @@ requests = ">=2.18.4"
 name = "mistune"
 version = "2.0.5"
 description = "A sane Markdown parser with useful plugins and renderers"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -3444,7 +3292,6 @@ files = [
 name = "mkdocs"
 version = "1.4.2"
 description = "Project documentation with Markdown."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3473,7 +3320,6 @@ min-versions = ["babel (==2.9.0)", "click (==7.0)", "colorama (==0.4)", "ghp-imp
 name = "mkdocs-material"
 version = "9.0.10"
 description = "Documentation that simply works"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3496,7 +3342,6 @@ requests = ">=2.26"
 name = "mkdocs-material-extensions"
 version = "1.1.1"
 description = "Extension pack for Python Markdown and MkDocs Material."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3508,7 +3353,6 @@ files = [
 name = "mkdocs-mermaid2-plugin"
 version = "0.6.0"
 description = "A MkDocs plugin for including mermaid graphs in markdown sources"
-category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -3530,7 +3374,6 @@ setuptools = ">=18.5"
 name = "more-click"
 version = "0.1.2"
 description = "More click."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3548,7 +3391,6 @@ tests = ["coverage", "pytest"]
 name = "multidict"
 version = "6.0.4"
 description = "multidict implementation"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3632,7 +3474,6 @@ files = [
 name = "myst-parser"
 version = "0.18.1"
 description = "An extended commonmark compliant parser, with bridges to docutils & sphinx."
-category = "main"
 optional = true
 python-versions = ">=3.7"
 files = [
@@ -3659,7 +3500,6 @@ testing = ["beautifulsoup4", "coverage[toml]", "pytest (>=6,<7)", "pytest-cov",
 name = "nbclassic"
 version = "0.5.5"
 description = "Jupyter Notebook as a Jupyter Server extension."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3695,7 +3535,6 @@ test = ["coverage", "nbval", "pytest", "pytest-cov", "pytest-jupyter", "pytest-p
 name = "nbclient"
 version = "0.7.3"
 description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor."
-category = "dev"
 optional = false
 python-versions = ">=3.7.0"
 files = [
@@ -3705,7 +3544,7 @@ files = [
 
 [package.dependencies]
 jupyter-client = ">=6.1.12"
-jupyter-core = ">=4.12,<5.0.0 || >=5.1.0"
+jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0"
 nbformat = ">=5.1"
 traitlets = ">=5.3"
 
@@ -3718,7 +3557,6 @@ test = ["flaky", "ipykernel", "ipython", "ipywidgets", "nbconvert (>=7.0.0)", "p
 name = "nbconvert"
 version = "7.3.0"
 description = "Converting Jupyter Notebooks"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3757,7 +3595,6 @@ webpdf = ["pyppeteer (>=1,<1.1)"]
 name = "nbformat"
 version = "5.8.0"
 description = "The Jupyter Notebook format"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3779,7 +3616,6 @@ test = ["pep440", "pre-commit", "pytest", "testpath"]
 name = "ndex2"
 version = "3.5.0"
 description = "Nice CX Python includes a client and a data model."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3801,7 +3637,6 @@ urllib3 = ">=1.16"
 name = "nest-asyncio"
 version = "1.5.6"
 description = "Patch asyncio to allow nested event loops"
-category = "dev"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -3813,7 +3648,6 @@ files = [
 name = "networkx"
 version = "3.1"
 description = "Python package for creating and manipulating graphs and networks"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -3832,7 +3666,6 @@ test = ["codecov (>=2.1)", "pytest (>=7.2)", "pytest-cov (>=4.0)"]
 name = "nlpcloud"
 version = "1.0.39"
 description = "Python client for the NLP Cloud API"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3847,7 +3680,6 @@ requests = "*"
 name = "nltk"
 version = "3.8.1"
 description = "Natural Language Toolkit"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3873,7 +3705,6 @@ twitter = ["twython"]
 name = "notebook"
 version = "6.5.4"
 description = "A web-based notebook environment for interactive computing"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3908,7 +3739,6 @@ test = ["coverage", "nbval", "pytest", "pytest-cov", "requests", "requests-unixs
 name = "notebook-shim"
 version = "0.2.2"
 description = "A shim layer for notebook traits and config"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3926,7 +3756,6 @@ test = ["pytest", "pytest-console-scripts", "pytest-tornasync"]
 name = "numpy"
 version = "1.24.1"
 description = "Fundamental package for array computing in Python"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -3964,7 +3793,6 @@ files = [
 name = "oaklib"
 version = "0.5.15"
 description = "Ontology Access Kit: Python library for common ontology operations over a variety of backends"
-category = "main"
 optional = false
 python-versions = ">=3.9,<4.0.0"
 files = [
@@ -4010,7 +3838,6 @@ gilda = ["gilda (>=1.0.0)", "urllib3 (<2)"]
 name = "ols-client"
 version = "0.1.2"
 description = "A client to the EBI Ontology Lookup Service"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -4033,7 +3860,6 @@ tests = ["coverage", "pytest"]
 name = "ontoportal-client"
 version = "0.0.3"
 description = "A client to BioPortal and other OntoPortal instances."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -4053,7 +3879,6 @@ tests = ["coverage", "pytest", "unittest-templates"]
 name = "openai"
 version = "0.27.8"
 description = "Python client library for the OpenAI API"
-category = "main"
 optional = false
 python-versions = ">=3.7.1"
 files = [
@@ -4068,7 +3893,7 @@ tqdm = "*"
 
 [package.extras]
 datalib = ["numpy", "openpyxl (>=3.0.7)", "pandas (>=1.2.3)", "pandas-stubs (>=1.1.0.11)"]
-dev = ["black (>=21.6b0,<22.0)", "pytest (>=6.0.0,<7.0.0)", "pytest-asyncio", "pytest-mock"]
+dev = ["black (>=21.6b0,<22.0)", "pytest (==6.*)", "pytest-asyncio", "pytest-mock"]
 embeddings = ["matplotlib", "numpy", "openpyxl (>=3.0.7)", "pandas (>=1.2.3)", "pandas-stubs (>=1.1.0.11)", "plotly", "scikit-learn (>=1.0.2)", "scipy", "tenacity (>=8.0.1)"]
 wandb = ["numpy", "openpyxl (>=3.0.7)", "pandas (>=1.2.3)", "pandas-stubs (>=1.1.0.11)", "wandb"]
 
@@ -4076,7 +3901,6 @@ wandb = ["numpy", "openpyxl (>=3.0.7)", "pandas (>=1.2.3)", "pandas-stubs (>=1.1
 name = "openpyxl"
 version = "3.1.2"
 description = "A Python library to read/write Excel 2010 xlsx/xlsm files"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -4091,7 +3915,6 @@ et-xmlfile = "*"
 name = "packaging"
 version = "23.0"
 description = "Core utilities for Python packages"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -4103,7 +3926,6 @@ files = [
 name = "pandas"
 version = "2.0.3"
 description = "Powerful data structures for data analysis, time series, and statistics"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -4137,8 +3959,8 @@ files = [
 [package.dependencies]
 numpy = [
     {version = ">=1.20.3", markers = "python_version < \"3.10\""},
-    {version = ">=1.21.0", markers = "python_version >= \"3.10\""},
     {version = ">=1.23.2", markers = "python_version >= \"3.11\""},
+    {version = ">=1.21.0", markers = "python_version >= \"3.10\" and python_version < \"3.11\""},
 ]
 python-dateutil = ">=2.8.2"
 pytz = ">=2020.1"
@@ -4171,7 +3993,6 @@ xml = ["lxml (>=4.6.3)"]
 name = "pandocfilters"
 version = "1.5.0"
 description = "Utilities for writing pandoc filters in python"
-category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -4183,7 +4004,6 @@ files = [
 name = "pansql"
 version = "0.0.1"
 description = "sqldf for pandas"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -4200,7 +4020,6 @@ sqlalchemy = "*"
 name = "papermill"
 version = "2.4.0"
 description = "Parametrize and run Jupyter and nteract Notebooks"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -4234,7 +4053,6 @@ test = ["attrs (>=17.4.0)", "azure-datalake-store (>=0.0.30)", "azure-storage-bl
 name = "parse"
 version = "1.19.1"
 description = "parse() is the opposite of format()"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -4246,7 +4064,6 @@ files = [
 name = "parso"
 version = "0.8.3"
 description = "A Python Parser"
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -4262,7 +4079,6 @@ testing = ["docopt", "pytest (<6.0.0)"]
 name = "pathtools"
 version = "0.1.2"
 description = "File system general utilities"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -4273,7 +4089,6 @@ files = [
 name = "pexpect"
 version = "4.8.0"
 description = "Pexpect allows easy control of interactive console applications."
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -4288,7 +4103,6 @@ ptyprocess = ">=0.5"
 name = "pickleshare"
 version = "0.7.5"
 description = "Tiny 'shelve'-like database with concurrency support"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -4300,7 +4114,6 @@ files = [
 name = "pillow"
 version = "9.5.0"
 description = "Python Imaging Library (Fork)"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -4380,7 +4193,6 @@ tests = ["check-manifest", "coverage", "defusedxml", "markdown2", "olefile", "pa
 name = "pip"
 version = "23.2.1"
 description = "The PyPA recommended tool for installing Python packages."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -4390,25 +4202,23 @@ files = [
 
 [[package]]
 name = "platformdirs"
-version = "2.6.2"
+version = "3.10.0"
 description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "platformdirs-2.6.2-py3-none-any.whl", hash = "sha256:83c8f6d04389165de7c9b6f0c682439697887bca0aa2f1c87ef1826be3584490"},
-    {file = "platformdirs-2.6.2.tar.gz", hash = "sha256:e1fea1fe471b9ff8332e229df3cb7de4f53eeea4998d3b6bfff542115e998bd2"},
+    {file = "platformdirs-3.10.0-py3-none-any.whl", hash = "sha256:d7c24979f292f916dc9cbf8648319032f551ea8c49a4c9bf2fb556a02070ec1d"},
+    {file = "platformdirs-3.10.0.tar.gz", hash = "sha256:b45696dab2d7cc691a3226759c0d3b00c47c8b6e293d96f6436f733303f77f6d"},
 ]
 
 [package.extras]
-docs = ["furo (>=2022.12.7)", "proselint (>=0.13)", "sphinx (>=5.3)", "sphinx-autodoc-typehints (>=1.19.5)"]
-test = ["appdirs (==1.4.4)", "covdefaults (>=2.2.2)", "pytest (>=7.2)", "pytest-cov (>=4)", "pytest-mock (>=3.10)"]
+docs = ["furo (>=2023.7.26)", "proselint (>=0.13)", "sphinx (>=7.1.1)", "sphinx-autodoc-typehints (>=1.24)"]
+test = ["appdirs (==1.4.4)", "covdefaults (>=2.3)", "pytest (>=7.4)", "pytest-cov (>=4.1)", "pytest-mock (>=3.11.1)"]
 
 [[package]]
 name = "pluggy"
 version = "1.0.0"
 description = "plugin and hook calling mechanisms for python"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -4424,7 +4234,6 @@ testing = ["pytest", "pytest-benchmark"]
 name = "ply"
 version = "3.11"
 description = "Python Lex & Yacc"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -4436,7 +4245,6 @@ files = [
 name = "portalocker"
 version = "2.7.0"
 description = "Wraps the portalocker recipe for easy usage"
-category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -4456,7 +4264,6 @@ tests = ["pytest (>=5.4.1)", "pytest-cov (>=2.8.1)", "pytest-mypy (>=0.8.0)", "p
 name = "prefixcommons"
 version = "0.1.12"
 description = "A python API for working with ID prefixes"
-category = "main"
 optional = false
 python-versions = ">=3.7,<4.0"
 files = [
@@ -4474,7 +4281,6 @@ requests = ">=2.28.1,<3.0.0"
 name = "prefixmaps"
 version = "0.1.5"
 description = "A python library for retrieving semantic prefix maps"
-category = "main"
 optional = false
 python-versions = ">=3.7.6,<4.0.0"
 files = [
@@ -4497,7 +4303,6 @@ refresh = ["bioregistry[refresh] (>=0.8.0,<0.9.0)", "rdflib[refresh] (>=6.2.0,<7
 name = "prometheus-client"
 version = "0.16.0"
 description = "Python client for the Prometheus monitoring system."
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -4512,7 +4317,6 @@ twisted = ["twisted"]
 name = "prompt-toolkit"
 version = "3.0.38"
 description = "Library for building powerful interactive command lines in Python"
-category = "dev"
 optional = false
 python-versions = ">=3.7.0"
 files = [
@@ -4527,7 +4331,6 @@ wcwidth = "*"
 name = "pronto"
 version = "2.5.4"
 description = "Python frontend to ontologies."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -4545,7 +4348,6 @@ python-dateutil = ">=2.8,<3.0"
 name = "protobuf"
 version = "3.20.3"
 description = "Protocol Buffers"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -4577,7 +4379,6 @@ files = [
 name = "psutil"
 version = "5.9.4"
 description = "Cross-platform lib for process and system monitoring in Python."
-category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -4604,7 +4405,6 @@ test = ["enum34", "ipaddress", "mock", "pywin32", "wmi"]
 name = "ptyprocess"
 version = "0.7.0"
 description = "Run a subprocess in a pseudo terminal"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -4616,7 +4416,6 @@ files = [
 name = "pure-eval"
 version = "0.2.2"
 description = "Safely evaluate AST nodes without side effects"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -4631,7 +4430,6 @@ tests = ["pytest"]
 name = "py"
 version = "1.11.0"
 description = "library with cross-python path, ini-parsing, io, code, log facilities"
-category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -4643,7 +4441,6 @@ files = [
 name = "pyarrow"
 version = "12.0.0"
 description = "Python library for Apache Arrow"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -4681,7 +4478,6 @@ numpy = ">=1.16.6"
 name = "pycparser"
 version = "2.21"
 description = "C parser in Python"
-category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -4693,7 +4489,6 @@ files = [
 name = "pydantic"
 version = "2.1.1"
 description = "Data validation using Python type hints"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -4713,7 +4508,6 @@ email = ["email-validator (>=2.0.0)"]
 name = "pydantic-core"
 version = "2.4.0"
 description = ""
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -4827,7 +4621,6 @@ typing-extensions = ">=4.6.0,<4.7.0 || >4.7.0"
 name = "pydeck"
 version = "0.8.0"
 description = "Widget for deck.gl maps"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -4847,7 +4640,6 @@ jupyter = ["ipykernel (>=5.1.2)", "ipython (>=5.8.0)", "ipywidgets (>=7,<8)", "t
 name = "pygments"
 version = "2.14.0"
 description = "Pygments is a syntax highlighting package written in Python."
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -4862,7 +4654,6 @@ plugins = ["importlib-metadata"]
 name = "pyjsg"
 version = "0.11.10"
 description = "Python JSON Schema Grammar interpreter"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -4878,7 +4669,6 @@ jsonasobj = ">=1.2.1"
 name = "pymdown-extensions"
 version = "9.9.2"
 description = "Extension pack for Python Markdown."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -4893,7 +4683,6 @@ markdown = ">=3.2"
 name = "pympler"
 version = "1.0.1"
 description = "A development tool to measure, monitor and analyze the memory behavior of Python objects."
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -4905,7 +4694,6 @@ files = [
 name = "pyparsing"
 version = "3.0.9"
 description = "pyparsing module - Classes and methods to define and execute parsing grammars"
-category = "main"
 optional = false
 python-versions = ">=3.6.8"
 files = [
@@ -4920,7 +4708,6 @@ diagrams = ["jinja2", "railroad-diagrams"]
 name = "pyrdfa3"
 version = "3.5.3"
 description = "pyRdfa Libray"
-category = "main"
 optional = true
 python-versions = "*"
 files = [
@@ -4936,7 +4723,6 @@ rdflib = "*"
 name = "pyrsistent"
 version = "0.19.3"
 description = "Persistent/Functional/Immutable data structures"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -4973,7 +4759,6 @@ files = [
 name = "pyshex"
 version = "0.8.1"
 description = "Python ShEx Implementation"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -4996,7 +4781,6 @@ urllib3 = "*"
 name = "pyshexc"
 version = "0.9.1"
 description = "PyShExC - Python ShEx compiler"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -5016,7 +4800,6 @@ shexjsg = ">=0.8.1"
 name = "pysolr"
 version = "3.9.0"
 description = "Lightweight Python client for Apache Solr"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -5033,7 +4816,6 @@ solrcloud = ["kazoo (>=2.5.0)"]
 name = "pystow"
 version = "0.5.0"
 description = "Easily pick a place to store data for your python package."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -5058,7 +4840,6 @@ xml = ["lxml"]
 name = "pytest"
 version = "7.2.1"
 description = "pytest: simple powerful testing with Python"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -5082,7 +4863,6 @@ testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.
 name = "pytest-logging"
 version = "2015.11.4"
 description = "Configures logging and allows tweaking the log level with a py.test flag"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -5096,7 +4876,6 @@ pytest = ">=2.8.1"
 name = "python-dateutil"
 version = "2.8.2"
 description = "Extensions to the standard Python datetime module"
-category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
 files = [
@@ -5111,7 +4890,6 @@ six = ">=1.5"
 name = "python-json-logger"
 version = "2.0.7"
 description = "A python library adding a json log formatter"
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -5123,7 +4901,6 @@ files = [
 name = "python-multipart"
 version = "0.0.5"
 description = "A streaming multipart parser for Python"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -5137,7 +4914,6 @@ six = ">=1.4.0"
 name = "python-pptx"
 version = "0.6.21"
 description = "Generate and manipulate Open XML PowerPoint (.pptx) files"
-category = "main"
 optional = true
 python-versions = "*"
 files = [
@@ -5153,7 +4929,6 @@ XlsxWriter = ">=0.5.7"
 name = "python-ulid"
 version = "1.1.0"
 description = "Universally Unique Lexicographically Sortable Identifier"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -5165,7 +4940,6 @@ files = [
 name = "pytrie"
 version = "0.4.0"
 description = "A pure Python implementation of the trie data structure."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -5179,7 +4953,6 @@ sortedcontainers = "*"
 name = "pytz"
 version = "2022.7.1"
 description = "World timezone definitions, modern and historical"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -5191,7 +4964,6 @@ files = [
 name = "pywin32"
 version = "306"
 description = "Python for Window Extensions"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -5215,7 +4987,6 @@ files = [
 name = "pywinpty"
 version = "2.0.10"
 description = "Pseudo terminal support for Windows from Python."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -5231,7 +5002,6 @@ files = [
 name = "pyyaml"
 version = "6.0.1"
 description = "YAML parser and emitter for Python"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -5281,7 +5051,6 @@ files = [
 name = "pyyaml-env-tag"
 version = "0.1"
 description = "A custom YAML tag for referencing environment variables in YAML files. "
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -5296,7 +5065,6 @@ pyyaml = "*"
 name = "pyzmq"
 version = "25.0.2"
 description = "Python bindings for 0MQ"
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -5386,7 +5154,6 @@ cffi = {version = "*", markers = "implementation_name == \"pypy\""}
 name = "qtconsole"
 version = "5.4.2"
 description = "Jupyter Qt console"
-category = "dev"
 optional = false
 python-versions = ">= 3.7"
 files = [
@@ -5413,7 +5180,6 @@ test = ["flaky", "pytest", "pytest-qt"]
 name = "qtpy"
 version = "2.3.1"
 description = "Provides an abstraction layer on top of the various Qt bindings (PyQt5/6 and PySide2/6)."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -5431,7 +5197,6 @@ test = ["pytest (>=6,!=7.0.0,!=7.0.1)", "pytest-cov (>=3.0.0)", "pytest-qt"]
 name = "ratelimit"
 version = "2.2.1"
 description = "API rate limit decorator"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -5442,7 +5207,6 @@ files = [
 name = "rdflib"
 version = "6.2.0"
 description = "RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -5467,7 +5231,6 @@ tests = ["html5lib", "pytest", "pytest-cov"]
 name = "rdflib-jsonld"
 version = "0.6.1"
 description = "rdflib extension adding JSON-LD parser and serializer"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -5482,7 +5245,6 @@ rdflib = ">=5.0.0"
 name = "rdflib-shim"
 version = "1.0.3"
 description = "Shim for rdflib 5 and 6 incompatibilities"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -5498,7 +5260,6 @@ rdflib-jsonld = "0.6.1"
 name = "recipe-scrapers"
 version = "14.35.0"
 description = "Python package, scraping recipes from all over the internet"
-category = "main"
 optional = true
 python-versions = ">=3.6"
 files = [
@@ -5516,7 +5277,6 @@ requests = ">=2.19.1"
 name = "regex"
 version = "2022.10.31"
 description = "Alternative regular expression module, to replace re."
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -5614,7 +5374,6 @@ files = [
 name = "requests"
 version = "2.31.0"
 description = "Python HTTP for Humans."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -5636,7 +5395,6 @@ use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"]
 name = "requests-cache"
 version = "1.0.1"
 description = "A persistent cache for python requests"
-category = "main"
 optional = false
 python-versions = ">=3.7,<4.0"
 files = [
@@ -5667,7 +5425,6 @@ yaml = ["pyyaml (>=5.4)"]
 name = "requests-toolbelt"
 version = "0.10.1"
 description = "A utility belt for advanced users of python-requests"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -5682,7 +5439,6 @@ requests = ">=2.0.1,<3.0.0"
 name = "rfc3339-validator"
 version = "0.1.4"
 description = "A pure python RFC3339 validator"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -5697,7 +5453,6 @@ six = "*"
 name = "rfc3986"
 version = "1.5.0"
 description = "Validating URI References per RFC 3986"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -5715,7 +5470,6 @@ idna2008 = ["idna"]
 name = "rfc3986-validator"
 version = "0.1.1"
 description = "Pure python rfc3986 validator"
-category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -5727,7 +5481,6 @@ files = [
 name = "rfc3987"
 version = "1.3.8"
 description = "Parsing and validation of URIs (RFC 3986) and IRIs (RFC 3987)"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -5739,7 +5492,6 @@ files = [
 name = "rich"
 version = "13.3.1"
 description = "Render rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal"
-category = "main"
 optional = false
 python-versions = ">=3.7.0"
 files = [
@@ -5758,7 +5510,6 @@ jupyter = ["ipywidgets (>=7.5.1,<9)"]
 name = "ruamel-yaml"
 version = "0.17.31"
 description = "ruamel.yaml is a YAML parser/emitter that supports roundtrip preservation of comments, seq/map flow style, and map key order"
-category = "main"
 optional = false
 python-versions = ">=3"
 files = [
@@ -5777,7 +5528,6 @@ jinja2 = ["ruamel.yaml.jinja2 (>=0.2)"]
 name = "ruamel-yaml-clib"
 version = "0.2.7"
 description = "C version of reader, parser and emitter for ruamel.yaml derived from libyaml"
-category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -5824,7 +5574,6 @@ files = [
 name = "s3transfer"
 version = "0.6.0"
 description = "An Amazon S3 Transfer Manager"
-category = "main"
 optional = false
 python-versions = ">= 3.7"
 files = [
@@ -5842,7 +5591,6 @@ crt = ["botocore[crt] (>=1.20.29,<2.0a.0)"]
 name = "scikit-learn"
 version = "1.2.1"
 description = "A set of python modules for machine learning and data mining"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -5885,7 +5633,6 @@ tests = ["black (>=22.3.0)", "flake8 (>=3.8.2)", "matplotlib (>=3.1.3)", "mypy (
 name = "scipy"
 version = "1.9.3"
 description = "Fundamental algorithms for scientific computing in Python"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -5924,7 +5671,6 @@ test = ["asv", "gmpy2", "mpmath", "pytest", "pytest-cov", "pytest-xdist", "sciki
 name = "seaborn"
 version = "0.12.2"
 description = "Statistical data visualization"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -5946,7 +5692,6 @@ stats = ["scipy (>=1.3)", "statsmodels (>=0.10)"]
 name = "semsimian"
 version = "0.1.18"
 description = ""
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -5991,7 +5736,6 @@ files = [
 name = "semsql"
 version = "0.3.2"
 description = ""
-category = "main"
 optional = false
 python-versions = ">=3.8,<4.0"
 files = [
@@ -6008,7 +5752,6 @@ SQLAlchemy-Utils = ">=0.38.2,<0.39.0"
 name = "send2trash"
 version = "1.8.0"
 description = "Send file to trash natively under Mac OS X, Windows and Linux."
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -6025,7 +5768,6 @@ win32 = ["pywin32"]
 name = "setuptools"
 version = "67.6.1"
 description = "Easily download, build, install, upgrade, and uninstall Python packages"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -6042,7 +5784,6 @@ testing-integration = ["build[virtualenv]", "filelock (>=3.4.0)", "jaraco.envs (
 name = "shexjsg"
 version = "0.8.2"
 description = "ShExJSG - Astract Syntax Tree for the ShEx 2.0 language"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -6057,7 +5798,6 @@ pyjsg = ">=0.11.10"
 name = "six"
 version = "1.16.0"
 description = "Python 2 and 3 compatibility utilities"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -6069,7 +5809,6 @@ files = [
 name = "smmap"
 version = "5.0.0"
 description = "A pure Python implementation of a sliding window memory map manager"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -6081,7 +5820,6 @@ files = [
 name = "sniffio"
 version = "1.3.0"
 description = "Sniff out which async library your code is running under"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -6093,7 +5831,6 @@ files = [
 name = "snowballstemmer"
 version = "2.2.0"
 description = "This package provides 29 stemmers for 28 languages generated from Snowball algorithms."
-category = "main"
 optional = true
 python-versions = "*"
 files = [
@@ -6105,7 +5842,6 @@ files = [
 name = "sortedcontainers"
 version = "2.4.0"
 description = "Sorted Containers -- Sorted List, Sorted Dict, Sorted Set"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -6117,7 +5853,6 @@ files = [
 name = "soupsieve"
 version = "2.3.2.post1"
 description = "A modern CSS selector implementation for Beautiful Soup."
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -6129,7 +5864,6 @@ files = [
 name = "sparqlslurper"
 version = "0.5.1"
 description = "SPARQL Slurper for rdflib"
-category = "main"
 optional = false
 python-versions = ">=3.7.4"
 files = [
@@ -6146,7 +5880,6 @@ sparqlwrapper = ">=1.8.2"
 name = "sparqlwrapper"
 version = "2.0.0"
 description = "SPARQL Endpoint interface to Python"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -6167,7 +5900,6 @@ pandas = ["pandas (>=1.3.5)"]
 name = "speechrecognition"
 version = "3.10.0"
 description = "Library for performing speech recognition, with support for several engines and APIs, online and offline."
-category = "main"
 optional = true
 python-versions = ">=3.8"
 files = [
@@ -6185,7 +5917,6 @@ whisper-api = ["openai"]
 name = "sphinx"
 version = "5.3.0"
 description = "Python documentation generator"
-category = "main"
 optional = true
 python-versions = ">=3.6"
 files = [
@@ -6222,7 +5953,6 @@ test = ["cython", "html5lib", "pytest (>=4.6)", "typed_ast"]
 name = "sphinx-autodoc-typehints"
 version = "1.21.0"
 description = "Type hints (PEP 484) support for the Sphinx autodoc extension"
-category = "main"
 optional = true
 python-versions = ">=3.7"
 files = [
@@ -6243,7 +5973,6 @@ type-comment = ["typed-ast (>=1.5.4)"]
 name = "sphinx-autodoc-typehints"
 version = "1.22"
 description = "Type hints (PEP 484) support for the Sphinx autodoc extension"
-category = "main"
 optional = true
 python-versions = ">=3.7"
 files = [
@@ -6252,7 +5981,8 @@ files = [
 ]
 
 [package.dependencies]
-sphinx = ">=5.3"
+furo = {version = ">=2022.12.7", optional = true, markers = "extra == \"docs\""}
+sphinx = {version = ">=5.3", optional = true, markers = "extra != \"docs\""}
 
 [package.extras]
 docs = ["furo (>=2022.12.7)", "sphinx (>=6.1.3)", "sphinx-autodoc-typehints (>=1.21)"]
@@ -6263,7 +5993,6 @@ type-comment = ["typed-ast (>=1.5.4)"]
 name = "sphinx-basic-ng"
 version = "1.0.0b1"
 description = "A modern skeleton for Sphinx themes."
-category = "main"
 optional = true
 python-versions = ">=3.7"
 files = [
@@ -6281,7 +6010,6 @@ docs = ["furo", "ipython", "myst-parser", "sphinx-copybutton", "sphinx-inline-ta
 name = "sphinx-click"
 version = "4.4.0"
 description = "Sphinx extension that automatically documents click applications"
-category = "main"
 optional = true
 python-versions = ">=3.7"
 files = [
@@ -6298,7 +6026,6 @@ sphinx = ">=2.0"
 name = "sphinx-rtd-theme"
 version = "1.1.1"
 description = "Read the Docs theme for Sphinx"
-category = "main"
 optional = true
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7"
 files = [
@@ -6317,7 +6044,6 @@ dev = ["bump2version", "sphinxcontrib-httpdomain", "transifex-client", "wheel"]
 name = "sphinxcontrib-applehelp"
 version = "1.0.4"
 description = "sphinxcontrib-applehelp is a Sphinx extension which outputs Apple help books"
-category = "main"
 optional = true
 python-versions = ">=3.8"
 files = [
@@ -6333,7 +6059,6 @@ test = ["pytest"]
 name = "sphinxcontrib-devhelp"
 version = "1.0.2"
 description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp document."
-category = "main"
 optional = true
 python-versions = ">=3.5"
 files = [
@@ -6349,7 +6074,6 @@ test = ["pytest"]
 name = "sphinxcontrib-htmlhelp"
 version = "2.0.1"
 description = "sphinxcontrib-htmlhelp is a sphinx extension which renders HTML help files"
-category = "main"
 optional = true
 python-versions = ">=3.8"
 files = [
@@ -6365,7 +6089,6 @@ test = ["html5lib", "pytest"]
 name = "sphinxcontrib-jsmath"
 version = "1.0.1"
 description = "A sphinx extension which renders display math in HTML via JavaScript"
-category = "main"
 optional = true
 python-versions = ">=3.5"
 files = [
@@ -6380,7 +6103,6 @@ test = ["flake8", "mypy", "pytest"]
 name = "sphinxcontrib-qthelp"
 version = "1.0.3"
 description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp document."
-category = "main"
 optional = true
 python-versions = ">=3.5"
 files = [
@@ -6396,7 +6118,6 @@ test = ["pytest"]
 name = "sphinxcontrib-serializinghtml"
 version = "1.1.5"
 description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)."
-category = "main"
 optional = true
 python-versions = ">=3.5"
 files = [
@@ -6412,7 +6133,6 @@ test = ["pytest"]
 name = "sphinxcontrib-websupport"
 version = "1.2.4"
 description = "Sphinx API for Web Apps"
-category = "main"
 optional = true
 python-versions = ">=3.5"
 files = [
@@ -6431,7 +6151,6 @@ test = ["Sphinx", "pytest", "sqlalchemy", "whoosh"]
 name = "sqlalchemy"
 version = "1.4.45"
 description = "Database Abstraction Library"
-category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
 files = [
@@ -6479,7 +6198,7 @@ files = [
 ]
 
 [package.dependencies]
-greenlet = {version = "!=0.4.17", markers = "python_version >= \"3\" and platform_machine == \"aarch64\" or python_version >= \"3\" and platform_machine == \"ppc64le\" or python_version >= \"3\" and platform_machine == \"x86_64\" or python_version >= \"3\" and platform_machine == \"amd64\" or python_version >= \"3\" and platform_machine == \"AMD64\" or python_version >= \"3\" and platform_machine == \"win32\" or python_version >= \"3\" and platform_machine == \"WIN32\""}
+greenlet = {version = "!=0.4.17", markers = "python_version >= \"3\" and (platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\")"}
 
 [package.extras]
 aiomysql = ["aiomysql", "greenlet (!=0.4.17)"]
@@ -6506,7 +6225,6 @@ sqlcipher = ["sqlcipher3-binary"]
 name = "sqlalchemy-utils"
 version = "0.38.3"
 description = "Various utility functions for SQLAlchemy."
-category = "main"
 optional = false
 python-versions = "~=3.6"
 files = [
@@ -6535,7 +6253,6 @@ url = ["furl (>=0.4.1)"]
 name = "sqlite-fts4"
 version = "1.0.3"
 description = "Python functions for working with SQLite FTS4 search"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -6548,14 +6265,13 @@ test = ["pytest"]
 
 [[package]]
 name = "sqlite-utils"
-version = "3.34"
+version = "3.35"
 description = "CLI tool and Python library for manipulating SQLite databases"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "sqlite-utils-3.34.tar.gz", hash = "sha256:4607683cbb32cfd4f3c63929045eaa020ab0221c5036f9bb41b7b25bc755cd23"},
-    {file = "sqlite_utils-3.34-py3-none-any.whl", hash = "sha256:234c2a3245e43ea7da588c1a879904e4b139f44ef621f5a9376d737a67e6077f"},
+    {file = "sqlite-utils-3.35.tar.gz", hash = "sha256:8f6fe7f8d12772cd5cf4594703a98dcd0c37c0fd6820dd20541ba74b9fca363a"},
+    {file = "sqlite_utils-3.35-py3-none-any.whl", hash = "sha256:d95591db18716ce7eac9a6359f4958598944d9e6640ccc42a2be6ab8456edddf"},
 ]
 
 [package.dependencies]
@@ -6577,7 +6293,6 @@ tui = ["trogon"]
 name = "sssom"
 version = "0.3.39"
 description = "Operations on SSSOM mapping tables"
-category = "main"
 optional = false
 python-versions = ">=3.8,<4.0"
 files = [
@@ -6605,7 +6320,6 @@ validators = ">=0.20.0"
 name = "sssom-schema"
 version = "0.15.0"
 description = "SSSOM is a Simple Standard for Sharing Ontology Mappings."
-category = "main"
 optional = false
 python-versions = ">=3.7.6,<4.0.0"
 files = [
@@ -6621,7 +6335,6 @@ mkdocs-mermaid2-plugin = ">=0.6.0,<0.7.0"
 name = "stack-data"
 version = "0.6.2"
 description = "Extract data from python stack frames and tracebacks for informative displays"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -6641,7 +6354,6 @@ tests = ["cython", "littleutils", "pygments", "pytest", "typeguard"]
 name = "starlette"
 version = "0.27.0"
 description = "The little ASGI library that shines."
-category = "main"
 optional = true
 python-versions = ">=3.7"
 files = [
@@ -6660,7 +6372,6 @@ full = ["httpx (>=0.22.0)", "itsdangerous", "jinja2", "python-multipart", "pyyam
 name = "streamlit"
 version = "1.22.0"
 description = "A faster way to build and share data apps"
-category = "main"
 optional = false
 python-versions = ">=3.7, !=3.9.7"
 files = [
@@ -6701,7 +6412,6 @@ snowflake = ["snowflake-snowpark-python"]
 name = "tabulate"
 version = "0.9.0"
 description = "Pretty-print tabular data"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -6716,7 +6426,6 @@ widechars = ["wcwidth"]
 name = "tenacity"
 version = "8.2.2"
 description = "Retry code until it succeeds"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -6731,7 +6440,6 @@ doc = ["reno", "sphinx", "tornado (>=4.5)"]
 name = "terminado"
 version = "0.17.1"
 description = "Tornado websocket backend for the Xterm.js Javascript terminal emulator library."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -6752,7 +6460,6 @@ test = ["pre-commit", "pytest (>=7.0)", "pytest-timeout"]
 name = "textract"
 version = "1.5.0"
 description = "extract text from any document. no muss. no fuss."
-category = "main"
 optional = true
 python-versions = "*"
 files = [
@@ -6774,7 +6481,6 @@ xlrd = "*"
 name = "textwrap3"
 version = "0.9.2"
 description = "textwrap from Python 3.6 backport (plus a few tweaks)"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -6786,7 +6492,6 @@ files = [
 name = "threadpoolctl"
 version = "3.1.0"
 description = "threadpoolctl"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -6798,7 +6503,6 @@ files = [
 name = "tiktoken"
 version = "0.3.3"
 description = "tiktoken is a fast BPE tokeniser for use with OpenAI's models"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -6844,7 +6548,6 @@ blobfile = ["blobfile (>=2)"]
 name = "tinycss2"
 version = "1.2.1"
 description = "A tiny CSS parser"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -6863,7 +6566,6 @@ test = ["flake8", "isort", "pytest"]
 name = "toml"
 version = "0.10.2"
 description = "Python Library for Tom's Obvious, Minimal Language"
-category = "main"
 optional = false
 python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -6875,7 +6577,6 @@ files = [
 name = "tomli"
 version = "2.0.1"
 description = "A lil' TOML parser"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -6887,7 +6588,6 @@ files = [
 name = "toolz"
 version = "0.12.0"
 description = "List processing tools and functional utilities"
-category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -6899,7 +6599,6 @@ files = [
 name = "tornado"
 version = "6.2"
 description = "Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed."
-category = "main"
 optional = false
 python-versions = ">= 3.7"
 files = [
@@ -6920,7 +6619,6 @@ files = [
 name = "tox"
 version = "3.28.0"
 description = "tox is a generic virtualenv management and test command line tool"
-category = "dev"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
 files = [
@@ -6946,7 +6644,6 @@ testing = ["flaky (>=3.4.0)", "freezegun (>=0.3.11)", "pathlib2 (>=2.3.3)", "psu
 name = "tqdm"
 version = "4.64.1"
 description = "Fast, Extensible Progress Meter"
-category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7"
 files = [
@@ -6967,7 +6664,6 @@ telegram = ["requests"]
 name = "traitlets"
 version = "5.9.0"
 description = "Traitlets Python configuration system"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -6983,7 +6679,6 @@ test = ["argcomplete (>=2.0)", "pre-commit", "pytest", "pytest-mock"]
 name = "typing-extensions"
 version = "4.7.1"
 description = "Backported and Experimental Type Hints for Python 3.7+"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -6995,7 +6690,6 @@ files = [
 name = "tzdata"
 version = "2023.3"
 description = "Provider of IANA time zone data"
-category = "main"
 optional = false
 python-versions = ">=2"
 files = [
@@ -7007,7 +6701,6 @@ files = [
 name = "tzlocal"
 version = "5.0"
 description = "tzinfo object for the local timezone"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -7025,7 +6718,6 @@ devenv = ["black", "check-manifest", "flake8", "pyroma", "pytest (>=4.3)", "pyte
 name = "unidecode"
 version = "1.3.6"
 description = "ASCII transliterations of Unicode text"
-category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -7037,7 +6729,6 @@ files = [
 name = "uri-template"
 version = "1.2.0"
 description = "RFC 6570 URI Template Processor"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -7052,7 +6743,6 @@ dev = ["flake8 (<4.0.0)", "flake8-annotations", "flake8-bugbear", "flake8-commas
 name = "url-normalize"
 version = "1.4.3"
 description = "URL normalization for Python"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
 files = [
@@ -7067,7 +6757,6 @@ six = "*"
 name = "urllib3"
 version = "1.26.14"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
 files = [
@@ -7084,7 +6773,6 @@ socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]
 name = "uvicorn"
 version = "0.20.0"
 description = "The lightning-fast ASGI server."
-category = "main"
 optional = true
 python-versions = ">=3.7"
 files = [
@@ -7103,7 +6791,6 @@ standard = ["colorama (>=0.4)", "httptools (>=0.5.0)", "python-dotenv (>=0.13)",
 name = "validators"
 version = "0.20.0"
 description = "Python Data Validation for Humans™."
-category = "main"
 optional = false
 python-versions = ">=3.4"
 files = [
@@ -7118,30 +6805,28 @@ test = ["flake8 (>=2.4.0)", "isort (>=4.2.2)", "pytest (>=2.2.3)"]
 
 [[package]]
 name = "virtualenv"
-version = "20.17.1"
+version = "20.24.3"
 description = "Virtual Python Environment builder"
-category = "dev"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 files = [
-    {file = "virtualenv-20.17.1-py3-none-any.whl", hash = "sha256:ce3b1684d6e1a20a3e5ed36795a97dfc6af29bc3970ca8dab93e11ac6094b3c4"},
-    {file = "virtualenv-20.17.1.tar.gz", hash = "sha256:f8b927684efc6f1cc206c9db297a570ab9ad0e51c16fa9e45487d36d1905c058"},
+    {file = "virtualenv-20.24.3-py3-none-any.whl", hash = "sha256:95a6e9398b4967fbcb5fef2acec5efaf9aa4972049d9ae41f95e0972a683fd02"},
+    {file = "virtualenv-20.24.3.tar.gz", hash = "sha256:e5c3b4ce817b0b328af041506a2a299418c98747c4b1e68cb7527e74ced23efc"},
 ]
 
 [package.dependencies]
-distlib = ">=0.3.6,<1"
-filelock = ">=3.4.1,<4"
-platformdirs = ">=2.4,<3"
+distlib = ">=0.3.7,<1"
+filelock = ">=3.12.2,<4"
+platformdirs = ">=3.9.1,<4"
 
 [package.extras]
-docs = ["proselint (>=0.13)", "sphinx (>=5.3)", "sphinx-argparse (>=0.3.2)", "sphinx-rtd-theme (>=1)", "towncrier (>=22.8)"]
-testing = ["coverage (>=6.2)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=21.3)", "pytest (>=7.0.1)", "pytest-env (>=0.6.2)", "pytest-freezegun (>=0.4.2)", "pytest-mock (>=3.6.1)", "pytest-randomly (>=3.10.3)", "pytest-timeout (>=2.1)"]
+docs = ["furo (>=2023.5.20)", "proselint (>=0.13)", "sphinx (>=7.0.1)", "sphinx-argparse (>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.6)"]
+test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.4)", "pytest-env (>=0.8.2)", "pytest-freezer (>=0.4.8)", "pytest-mock (>=3.11.1)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=68)", "time-machine (>=2.10)"]
 
 [[package]]
 name = "visitor"
 version = "0.1.3"
 description = "A tiny pythonic visitor implementation."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -7152,7 +6837,6 @@ files = [
 name = "w3lib"
 version = "2.1.1"
 description = "Library of web-related functions"
-category = "main"
 optional = true
 python-versions = ">=3.7"
 files = [
@@ -7164,7 +6848,6 @@ files = [
 name = "watchdog"
 version = "2.2.1"
 description = "Filesystem events monitoring"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -7205,7 +6888,6 @@ watchmedo = ["PyYAML (>=3.10)"]
 name = "wcwidth"
 version = "0.2.6"
 description = "Measures the displayed width of unicode strings in a terminal"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -7217,7 +6899,6 @@ files = [
 name = "webcolors"
 version = "1.12"
 description = "A library for working with color names and color values formats defined by HTML and CSS."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -7229,7 +6910,6 @@ files = [
 name = "webencodings"
 version = "0.5.1"
 description = "Character encoding aliases for legacy web content"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -7241,7 +6921,6 @@ files = [
 name = "websocket-client"
 version = "1.5.1"
 description = "WebSocket client for Python with low level API options"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -7258,7 +6937,6 @@ test = ["websockets"]
 name = "werkzeug"
 version = "2.1.2"
 description = "The comprehensive WSGI web application library."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -7273,7 +6951,6 @@ watchdog = ["watchdog"]
 name = "widgetsnbextension"
 version = "4.0.7"
 description = "Jupyter interactive widgets for Jupyter Notebook"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -7285,7 +6962,6 @@ files = [
 name = "wikipedia"
 version = "1.4.0"
 description = "Wikipedia API for Python"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -7300,7 +6976,6 @@ requests = ">=2.0.0,<3.0.0"
 name = "wikipedia-api"
 version = "0.5.8"
 description = "Python Wrapper for Wikipedia"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -7315,7 +6990,6 @@ requests = "*"
 name = "wrapt"
 version = "1.14.1"
 description = "Module for decorators, wrappers and monkey patching."
-category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
 files = [
@@ -7389,7 +7063,6 @@ files = [
 name = "wtforms"
 version = "3.0.1"
 description = "Form validation and rendering for Python web development."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -7407,7 +7080,6 @@ email = ["email-validator"]
 name = "xlrd"
 version = "2.0.1"
 description = "Library for developers to extract data from Microsoft Excel (tm) .xls spreadsheet files"
-category = "main"
 optional = true
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
 files = [
@@ -7424,7 +7096,6 @@ test = ["pytest", "pytest-cov"]
 name = "xlsxwriter"
 version = "3.1.0"
 description = "A Python module for creating Excel XLSX files."
-category = "main"
 optional = true
 python-versions = ">=3.6"
 files = [
@@ -7436,7 +7107,6 @@ files = [
 name = "yarl"
 version = "1.8.2"
 description = "Yet another URL library"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -7524,7 +7194,6 @@ multidict = ">=4.0"
 name = "zipp"
 version = "3.12.0"
 description = "Backport of pathlib-compatible object wrapper for zip files"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -7547,4 +7216,4 @@ web = ["Jinja2", "fastapi", "uvicorn"]
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.9,<3.9.7 || >3.9.7,<4.0"
-content-hash = "2ef9df46bc3c6c45516c4aba2a4b7b1ce30d4f1f06b0a141fd20992010a8ff04"
+content-hash = "d4fca9528c1fb834b902ce60d44192616da743d75e8bd949e60f8b245ca71403"
diff --git a/pyproject.toml b/pyproject.toml
index 19a198625..75be64ac5 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -45,9 +45,9 @@ gpt4 = ">=0.0.1"
 "ruamel.yaml" = ">=0.17.31"
 requests = "^2.31.0"
 huggingface_hub  = {version = ">=0.15.1", extras = ["huggingface"], optional = true}
-llm = "^0.6.1"
+llm = "^0.8"
 llm-gpt4all = "^0.1.1"
-linkml = "^1.5.6"
+linkml = "^1.5.7"
 linkml-owl = "^0.3.0"
 
 [tool.poetry.dev-dependencies]