diff --git a/.github/workflows/lint.yml b/.github/workflows/lint.yml
index 6d95686c86..3fd262d089 100644
--- a/.github/workflows/lint.yml
+++ b/.github/workflows/lint.yml
@@ -14,16 +14,7 @@ jobs:
     steps:
       - uses: actions/checkout@v4
       - uses: actions/setup-python@v4
-
-      # ref: https://github.com/pre-commit/action
-      - uses: pre-commit/action@v3.0.1
-      - name: Help message if pre-commit fail
-        if: ${{ failure() }}
-        run: |
-          echo "You can install pre-commit hooks to automatically run formatting"
-          echo "on each commit with:"
-          echo "    pre-commit install"
-          echo "or you can run by hand on staged files with"
-          echo "    pre-commit run"
-          echo "or after-the-fact on already committed files with"
-          echo "    pre-commit run --all-files --hook-stage manual"
+      - name: "Run pre-commit"
+        run:
+          pip install -U pre-commit
+          pre-commit run --all-files --hook-stage manual
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 92862432fd..cd78710252 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,7 +1,7 @@
 
 repos:
 - repo: https://github.com/pre-commit/pre-commit-hooks
-  rev: v4.5.0
+  rev: v4.6.0
   hooks:
   - id: check-case-conflict
   - id: check-executables-have-shebangs
@@ -12,18 +12,10 @@ repos:
   #- id: trailing-whitespace
   #- id: check-json
 
-- repo: https://github.com/executablebooks/mdformat
-  rev: 0.7.17
-  hooks:
-    - id: mdformat
-      args: ["--wrap=120", "--number"]
-      additional_dependencies:
-        [mdformat-gfm, mdformat-frontmatter, mdformat-footnote, mdformat-gfm-alerts]
-
 # We use the Python version instead of the original version which seems to require Docker
 # https://github.com/koalaman/shellcheck-precommit
 - repo: https://github.com/shellcheck-py/shellcheck-py
-  rev: v0.9.0.6
+  rev: v0.10.0.1
   hooks:
     - id: shellcheck
       name: shellcheck
@@ -41,9 +33,17 @@ repos:
     types: [markdown]
     entry: bash scripts/check_anchors/check-anchors.sh
     language: node
+    
+- repo: https://github.com/executablebooks/mdformat
+  rev: 0.7.17
+  hooks:
+    - id: mdformat
+      args: ["--wrap=120", "--number"]
+      additional_dependencies:
+        [mdformat-gfm, mdformat-frontmatter, mdformat-footnote, mdformat-gfm-alerts]
 
 - repo: https://github.com/tcort/markdown-link-check
-  rev: v3.11.2
+  rev: v3.12.2
   hooks:
     - id: markdown-link-check
       args: ["-c", "markdown_link_config.json"]
@@ -57,7 +57,7 @@ repos:
     stages: [manual]
 
 - repo: https://github.com/python-jsonschema/check-jsonschema
-  rev: 0.27.3
+  rev: 0.28.4
   hooks:
     - id: check-github-workflows
 
@@ -69,7 +69,7 @@ repos:
     - id: rst-inline-touching-normal
 
 - repo: https://github.com/codespell-project/codespell
-  rev: "v2.2.6"
+  rev: "v2.3.0"
   hooks:
   - id: codespell
     args: ["-L", "fle,re-use,merchantibility,synching,crate,nin,infinit,te"]