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STAVE

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STAVE is an R package designed for storing and managing aggregate spatial-temporal genetic data. By “aggregate” we mean that data consist solely of counts (numerator and denominator). By “spatial-temporal” we mean that each observation is tied to a specific geographic location (latitude and longitude), and a precise collection time (a single day).

The primary goals of STAVE are:

  1. To provide a flexible data structure that can accommodate genetic data with varying levels of detail.
  2. To standardize data through a tightly defined format.
  3. To facilitate prevalence calculation from aggregate counts.

All documentation, including installation instructions and tutorials, are on the STAVE website.

Version History

The current version of the software is 1.0.0, released 16 Oct 2024.