uiothesis.sty

%%%%% 0. Global settings %%%%%

% APA Rule 2.22: Margins
\usepackage[margin=1in]{geometry}

% APA7 Rule 2.23: Paragraph Alignment
\usepackage[document]{ragged2e}
% % APA7 Rule 2.24: Paragraph Indentation
\setlength\parindent{0.5in}
\setlength{\RaggedRightParindent}{\parindent}

% Avoid breaking a word into two lines
\usepackage[none]{hyphenat}

% Polish letters, such as ``a with a tail'' need this packages
\usepackage[T2A,T1]{fontenc} %T2A is for Russian
% Must declare Russian font before calling Russian babel

% Russian alphabet
%//ref https://tex.stackexchange.com/questions/31709/can-one-instruct-lualatex-to-use-t2a-encoded-fonts
\usepackage{fontspec}
\setmainfont{CMU Serif}
\setsansfont{CMU Sans Serif}
\setmonofont{CMU Typewriter Text}

% This is from the UiO Master thesis template. Do not change anything.
\usepackage[utf8]{inputenc}
\usepackage[russian,british]{babel}
\usepackage{duomasterforside}

% Use this font for Feynman 's quote
\usepackage{calligra}

% Turn typewriter font to Fira Code and enable ligature
% BUT remember to change pdflatex to lualatex engine
\usepackage{fontspec}
\setmonofont{FiraCode-Regular.otf}[
    BoldFont=FiraCode-Bold.otf,
    Contextuals=Alternate % Activate the calt feature
]

% To set double spacing
\usepackage{setspace}
% Do not set 1.5-spacing or 2-spacing here because it messes up title page.
% Start double spacing from Acknowledgement chapter.

% Enable inline enumerate
\usepackage[inline]{enumitem}

% To enable page rotation (to landscape for wide tables, for example)
\usepackage{pdflscape}

% This adds colour into LaTeX.
\usepackage[dvipsnames]{xcolor}
% Define some commonly used colours
\definecolor{forestgreen}{HTML}{228B22}


%%%%% 1. Front matter %%%%%

% This package fixes TOC
\usepackage[numindex]{tocbibind}

%%%%% 2. Each chapter %%%%%

% Put "Chapter X" and title on the same line
\usepackage{titlesec}
\titleformat{\chapter}[block]%
    {\normalfont\huge\bfseries}%
    {\chaptertitlename\ \thechapter\ }{0em}{\huge}

% APA7 Rule 2.21 Line Spacing
% It is not necessary to add blank lines befroe or after headings, even if a heading falls at the end of a page. Do not add extra spacing between paragraphs.
%titlespacing*{\chapter}{<leftsep>}{<beforesep>}{<aftersep>}
\titlespacing*{\chapter}{0pt}{0pt}{11pt}

\usepackage{epigraph}
\setlength{\epigraphwidth}{0.618\textwidth}
\setlength{\epigraphrule}{0pt} % Turn off the line between epigraph and author

% To better present long quotes
\usepackage[english=british]{csquotes}

%%%%% 3. Tables %%%%%

% This adds colour shading to tables
\usepackage{colortbl}

% This allows multi-row to be produced
\usepackage{multirow}

% This aligns numbers along decimal points
\usepackage{dcolumn}
\newcolumntype{d}[1]{D{.}{.}{#1}}

% APA7: Figures and tables: label=bf, caption=it
\usepackage[
    format=plain,
    font=normalsize,
    labelfont=bf,
    textfont=it,
    labelsep=newline]{caption}
\captionsetup{
    justification=raggedright,
    singlelinecheck=false,
    margin=0cm
    } % Align left
%\AtEveryCite{\normalfont} % Prevent italic anywhere else in the document
\usepackage[capposition=top]{floatrow} % For ``Note.'' underneath the figures
%\DeclareCaptionFont{normal}{\fontsize{11}{13.2}\selectfont}
%\newcommand{\fignote}[1]{\floatsetup{font=normal,cappositon=bottom}\floatfoot{\large \textit{Note.} #1}}

\usepackage[flushleft]{threeparttable} % Otherwise the table notes run wider than the table
\usepackage{afterpage}
\usepackage{booktabs}   % To generate underlines in table header
\def\sym#1{\ifmmode^{#1}\else\(^{#1}\)\fi}%
\newcommand{\tabnote}[1]{\begin{tablenotes}\item \textit{Note.} #1\end{tablenotes}}

% Automate and standardise the table production process
\newcommand{\ltable}[5]{% %%% Landscape table WITH note
\begin{singlespace}
\setlength\parindent{0in}
\setlength{\RaggedRightParindent}{\parindent}
    \begin{landscape}
        \begin{table} \flushleft \small
            \begin{threeparttable}[htbp]
                \caption{#2}
                \label{#1}
                \vspace{-#5mm} % to eliminate the white gap
                #3 % this is where \begin{tabular}...\end{tabular} go
            \tabnote{\noindent #4}
            \end{threeparttable}
        \end{table}
    \end{landscape}
\setlength\parindent{0.5in}
\setlength{\RaggedRightParindent}{\parindent}
\end{singlespace}
}

\newcommand{\ltableX}[4]{% %%% Landscape table WITHOUT note
\begin{singlespace}
\setlength\parindent{0in}
\setlength{\RaggedRightParindent}{\parindent}
    \begin{landscape}
        \begin{table} \flushleft \small
            \begin{threeparttable}[htbp]
                \caption{#2}
                \label{#1}
                \vspace{-#4mm} % to eliminate the white gap
                #3 % this is where \begin{tabular}...\end{tabular} go
            \end{threeparttable}
        \end{table}
    \end{landscape}
\setlength\parindent{0.5in}
\setlength{\RaggedRightParindent}{\parindent}
\end{singlespace}
}
\newcommand{\ltableCont}[3]{% %%% Landscape table WITH note
\begin{singlespace}
\setlength\parindent{0in}
\setlength{\RaggedRightParindent}{\parindent}
    \begin{landscape}
        \begin{table} \flushleft \small
            \begin{threeparttable}[htbp]
                \caption*{Continued}
                \vspace{-#3mm} % to eliminate the white gap
                #1 % this is where \begin{tabular}...\end{tabular} go
            \tabnote{#2}
            \end{threeparttable}
        \end{table}
    \end{landscape}
\setlength\parindent{0.5in}
\setlength{\RaggedRightParindent}{\parindent}
\end{singlespace}
}
\newcommand{\ltableContX}[2]{% %%% Landscape table WITH note
\begin{singlespace}
\setlength\parindent{0in}
\setlength{\RaggedRightParindent}{\parindent}
    \begin{landscape}
        \begin{table} \flushleft \small
            \begin{threeparttable}[htbp]
                \caption*{Continued}
                \vspace{-#2mm} % to eliminate the white gap
                #1 % this is where \begin{tabular}...\end{tabular} go
            \end{threeparttable}
        \end{table}
    \end{landscape}
\setlength\parindent{0.5in}
\setlength{\RaggedRightParindent}{\parindent}
\end{singlespace}
}
\newcommand{\ptable}[5]{% %%% Portrait table WITH note
\begin{singlespace}
\setlength\parindent{0in}
\setlength{\RaggedRightParindent}{\parindent}
    \begin{table} \flushleft \small
        \begin{threeparttable}[htbp]
            \caption{#2}
            \label{#1}
            \vspace{-#5mm} % to eliminate the white gap
            #3 % this is where \begin{tabular}...\end{tabular} go
        \tabnote{#4}
        \end{threeparttable}
    \end{table}
\setlength\parindent{0.5in}
\setlength{\RaggedRightParindent}{\parindent}
\end{singlespace}
}
\newcommand{\ptableX}[4]{% %%% Portrait table WITHOUT note
\begin{singlespace}
\setlength\parindent{0in}
\setlength{\RaggedRightParindent}{\parindent}
    \begin{table} \flushleft \small
        \begin{threeparttable}[htbp]
            \caption{#2}
            \label{#1}
            \vspace{-#4mm} % to eliminate the white gap
            #3 % this is where \begin{tabular}...\end{tabular} go
        \end{threeparttable}
    \end{table}
\setlength\parindent{0.5in}
\setlength{\RaggedRightParindent}{\parindent}
\end{singlespace}
}
\newcommand{\ptableCont}[3]{% %%% Portrait table WITH note
\begin{singlespace}
\setlength\parindent{0in}
\setlength{\RaggedRightParindent}{\parindent}
    \begin{table} \flushleft \small
        \begin{threeparttable}[htbp]
            \caption*{Continued}
            \vspace{-#3mm} % to eliminate the white gap
            #1 % this is where \begin{tabular}...\end{tabular} go
        \tabnote{#2}
        \end{threeparttable}
    \end{table}
\setlength\parindent{0.5in}
\setlength{\RaggedRightParindent}{\parindent}
\end{singlespace}
}
\newcommand{\ptableContX}[2]{% %%% Portrait table WITHOUT note
\begin{singlespace}
\setlength\parindent{0in}
\setlength{\RaggedRightParindent}{\parindent}
    \begin{table} \flushleft \small
        \begin{threeparttable}[htbp]
            \caption*{Continued}
            \vspace{-#2mm} % to eliminate the white gap
            #1 % this is where \begin{tabular}...\end{tabular} go
        \end{threeparttable}
    \end{table}
\setlength\parindent{0.5in}
\setlength{\RaggedRightParindent}{\parindent}
\end{singlespace}
}


%%%%% 4. Figures %%%%%

% This is for inserting pictures/figures.
\usepackage{graphicx}
\graphicspath{ {./Figures/} }

% Enable alignment adjustment
\usepackage[export]{adjustbox}
% Use [margin=〈left〉 〈bottom〉 〈right〉 〈top〉]

% Automate and standardise the figure production process
\newcommand{\pfigure}[7]{ %%% Portrait figure WITH note
\setlength\parindent{0in}
\setlength{\RaggedRightParindent}{\parindent}
    \begin{figure}[!h]
        \caption{#2}
        \label{#1}
        \vspace{-#6cm}
            \includegraphics[width=#3\textwidth]{#4}
        \vspace{-#7cm}
        \floatfoot{\normalsize \textit{Note.} #5}
    \end{figure}
\setlength\parindent{0.5in}
\setlength{\RaggedRightParindent}{\parindent}
}
\newcommand{\pfigureX}[6]{ %%% Portrait figure WITHOUT note
\setlength\parindent{0in}
\setlength{\RaggedRightParindent}{\parindent}
    \begin{figure}[!h]
        \caption{#2}
        \label{#1}
        \vspace{-#5cm}
            \includegraphics[width=#3\textwidth]{#4}
        \vspace{-#6cm}
    \end{figure}
\setlength\parindent{0.5in}
\setlength{\RaggedRightParindent}{\parindent}
}
\newcommand{\lfigure}[7]{ %%% Landscape figure WITH note
\setlength\parindent{0in}
\setlength{\RaggedRightParindent}{\parindent}
    \begin{landscape}
        \begin{figure}[!h]
            \caption{#2}
            \label{#1}
            \vspace{-#6cm}
                \includegraphics[width=#3\textwidth]{#4}
            \vspace{-#7cm}
            \floatfoot{\normalsize \textit{Note.} #5}
        \end{figure}
    \end{landscape}
\setlength\parindent{0.5in}
\setlength{\RaggedRightParindent}{\parindent}
}
\newcommand{\lfigureX}[6]{ %%% Landscape figure WITHOUT note
\setlength\parindent{0in}
\setlength{\RaggedRightParindent}{\parindent}
    \begin{landscape}
        \begin{figure}[!h]
            \caption{#2}
            \label{#1}
            \vspace{-#5cm}
                \includegraphics[width=#3\textwidth]{#4}
            \vspace{-#6cm}
        \end{figure}
    \end{landscape}
\setlength\parindent{0.5in}
\setlength{\RaggedRightParindent}{\parindent}
}

% tikz

\usepackage{tikz}
\usetikzlibrary{automata,shapes,arrows,calc,positioning,decorations.pathmorphing}

\newcommand{\ptikz}[4]{ %%% Portrait figure WITH note
\setlength\parindent{0in}
\setlength{\RaggedRightParindent}{\parindent}
    \begin{figure}[!h]
        \caption{#2}
        \label{#1}
            #3
        \floatfoot{\normalsize \textit{Note.} #4}
    \end{figure}
\setlength\parindent{0.5in}
\setlength{\RaggedRightParindent}{\parindent}
}
\newcommand{\ptikzX}[3]{ %%% Portrait figure WITHOUT note
\setlength\parindent{0in}
\setlength{\RaggedRightParindent}{\parindent}
    \begin{figure}[!h]
        \caption{#2}
        \label{#1}
            #3
    \end{figure}
\setlength\parindent{0.5in}
\setlength{\RaggedRightParindent}{\parindent}
}
\newcommand{\ltikz}[4]{ %%% Landscape TikZ figure WITH note
\setlength\parindent{0in}
\setlength{\RaggedRightParindent}{\parindent}
    \begin{landscape}
        \begin{figure}[!h]
            \caption{#2}
            \label{#1}
                #3
            \floatfoot{\normalsize \textit{Note.} #4}
        \end{figure}
    \end{landscape}
\setlength\parindent{0.5in}
\setlength{\RaggedRightParindent}{\parindent}
}
\newcommand{\ltikzX}[3]{ %%% Landscape TikZ figure WITHOUT note
\setlength\parindent{0in}
\setlength{\RaggedRightParindent}{\parindent}
    \begin{landscape}
        \begin{figure}[!h]
            \caption{#2}
            \label{#1}
                #3
        \end{figure}
    \end{landscape}
\setlength\parindent{0.5in}
\setlength{\RaggedRightParindent}{\parindent}
}

%%%%% 5. Appendix %%%%%

%% Include PDF pages in the current file
\usepackage{pdfpages} %//tip Must load this package AFTER xcolor

%% This chunck is needed in order to turn inserted PDF files into hyperlinks.
\newcounter{includepdfpage}
\newcounter{currentpagecounter}
\newcommand{\addlabelstoallincludedpages}[1]{
    \refstepcounter{includepdfpage}
    \stepcounter{currentpagecounter}
    \label{#1.\thecurrentpagecounter}}
\newcommand{\modifiedincludepdf}[3]{
    \setcounter{currentpagecounter}{0}
    \includepdf[pages=#1,fitpaper,rotateoversize,pagecommand=\addlabelstoallincludedpages{#2}]{#3}
    }

% Use this package to ensure appendices are referenced correctly in toc
\usepackage[toc,page]{appendix}

% This package sucks R script from an external R file and enbed it into LaTeX as verbatim
\usepackage{verbatim}
% Then use
% \verbatiminput{folder/file.extension}
% at the place you want the verbatim to go in.

% This package breaks long lines in the  verbatim environment
\usepackage{listings}
\usepackage[verbatim]{lstfiracode} %//ref https://ctan.org/pkg/lstfiracode
\lstset{
    basicstyle=\normalsize\ttfamily, % the size of the fonts that are used for the code
    style=FiraCodeStyle,            % Use predefined FiraCodeStyle
    numbers=left,                   % where to put the line-numbers
    numberstyle=\normalsize\color{gray},  % the style that is used for the line-numbers
    stepnumber=1,                   % the step between two line-numbers. If it is 1, each line will be numbered
    numbersep=5pt,                  % how far the line-numbers are from the code
    backgroundcolor=\color{white},  % choose the background color. You must add \usepackage{color}
    showspaces=false,               % show spaces adding particular underscores
    keepspaces=true,
    columns=fullflexible,
    showstringspaces=false,         % underline spaces within strings
    showtabs=false,                 % show tabs within strings adding particular underscores
    frame=single,                   % adds a frame around the code
    rulecolor=\color{black},        % if not set, the frame-color may be changed on line-breaks within not-black text (e.g. commens (green here))
    tabsize=2,                      % sets default tabsize to 2 spaces
    %tab=\rightarrowfill,
    captionpos=b,                   % sets the caption-position to bottom
    breaklines=true,                % sets automatic line breaking
    breakatwhitespace=false,        % sets if automatic breaks should only happen at whitespace
    postbreak=\mbox{\textcolor{red}{$\hookrightarrow$}\space},
    keywordstyle=\color{blue},      % keyword style
    morekeywords={},
    deletekeywords={},
    commentstyle=\color{gray},   % comment style
    stringstyle=\color{PineGreen}      % string literal style
}
\lstdefinestyle{vscodeR}{
    language=R,
    belowcaptionskip=1\baselineskip,
    breaklines=true,
    frame=l,
    xleftmargin=\parindent,
    showstringspaces=false,
    basicstyle=\footnotesize\ttfamily,
    style=FiraCodeStyle,
    otherkeywords={!,!=,~,$,*,\&,\%/\%,\%*\%,\%\%,<-,<<-,/},
    alsoother={.$},
    keywordstyle=\bfseries\color{blue!60!black},
    commentstyle=\itshape\color{gray},
    identifierstyle=\color{BrickRed},
    stringstyle=\color{PineGreen},
}

\renewcommand{\lstlistingname}{R output} % Listing -> Algorithm
\renewcommand{\lstlistlistingname}{List of \lstlistingname s} % List of Listings -> List of R output

%%%%% 6. References %%%%%
\usepackage{ifplatform}

\usepackage[style=apa,sortcites=true,sorting=nyt,backend=biber, useprefix=false]{biblatex}
\DeclareLanguageMapping{british}{british-apa}
\ifwindows
    \addbibresource{M:\\pc\\Dokumenter\\MSc\\Thesis\\Bibliography\\Master.bib}
\else
    \addbibresource{~/uio/pc/Dokumenter/MSc/Thesis/Bibliography/Master.bib}
\fi

% Citation in possesive:
\newcommand{\poscite}[1]{\citeauthor{#1}'s (\citeyear{#1})}

%%%%% 7. Index %%%%%

% This is for multiple Indices
\usepackage{imakeidx}
\makeindex[name=a,title={Name Index}]
\makeindex[,title={Subject Index}]
% Present indices in two-column format
%\usepackage{multicol}

%                                                                          %
%                                                                          %
%                                                                          %
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% End Preamble %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Begin maths stuff %%%%%%%%%%%%%%%%%%%%%%%%%%%%
%                                                                          %
%                                                                          %
%                                                                          %

% Let's get the maths part over with
\usepackage{amsmath}
\usepackage{amssymb}
\usepackage{amsthm}
%\usepackage{amsfonts} % Do not turn this on because it clashes with other packages.

% I want to change QED square from an empty square (white) to a solid square (black).
\renewcommand\qedsymbol{$\blacksquare$}

% This package makes symbols bold.
\usepackage{bm}

% I have been typing ``with respect to'' too many times so here is a shortcut:
\newcommand{\wrt}{with respect to\ }
% along with many other shortcuts and re-definitions
\newcommand{\abs}[1]{\left|#1\right|}
\newcommand{\erf}[1]{\mathrm{erf}\left(#1\right)}
\renewcommand{\exp}[1]{\text{\Huge\emph{e}}^{#1}}
\newcommand{\expb}[1]{\mathrm{exp}\left\{#1\right\}}
\renewcommand{\sin}[1]{\mathrm{sin}\left(#1\right)}
\renewcommand{\cos}[1]{\mathrm{cos}\left(#1\right)}
\renewcommand{\tan}[1]{\mathrm{tan}\left(#1\right)}
\renewcommand{\sinh}[1]{\mathrm{sinh}\left(#1\right)}
\renewcommand{\cosh}[1]{\mathrm{cosh}\left(#1\right)}
\renewcommand{\tanh}[1]{\mathrm{tanh}\left(#1\right)}
\renewcommand{\arcsin}[1]{\mathrm{arcsin}\left(#1\right)}
\renewcommand{\arccos}[1]{\mathrm{arccos}\left(#1\right)}
\renewcommand{\arctan}[1]{\mathrm{arctan}\left(#1\right)}

% I do not like the default $\phi$ and $\epsilon$. I am going to change them to the shapes I prefer.
\renewcommand{\epsilon}{\varepsilon}
\renewcommand{\phi}{\varphi}

% Re-define maximisation and minimisation symbols
\renewcommand{\max}[2]{\underset{#2}{\text{max}}\{#1\}}
\renewcommand{\min}[2]{\underset{#2}{\text{min}}\{#1\}}

% Probabilities, expected values and variances will be used very often. I also want them to be in empty blackboard font:
\newcommand{\p}[1]{\mathbb{P}\left(#1\right)}
\newcommand{\E}[1]{\mathbb{E}\left(#1\right)}
\newcommand{\V}[1]{\mathbb{V}\left(#1\right)}
\newcommand{\var}[1]{\text{var}\left(#1\right)}

% Make all vectors and matrices bold
\newcommand{\m}[1]{\boldsymbol{#1}}
% Display the dimension of a matrix
\newcommand{\md}[3]{\underset{#2 \times #3}{\boldsymbol{#1}}}

% The default bar (such as for averages) is too short. I want it to be longer.
\newcommand{\mbar}[1]{\overline{\m{#1}}}
\newcommand{\mhat}[1]{\widehat{\m{#1}}}

% Identity matrix
\newcommand{\I}{\m{I}}
\newcommand{\Id}[1]{\m{I}_{#1}}
% Zero matrix
\newcommand{\Z}{\m{O}}
\newcommand{\Zd}[1]{\m{O}_{#1}}

% Transpose symbol
\usepackage{scalerel}
%\newcommand{\T}[1]{\m{#1}\strut^\intercal}
%\newcommand{\Ts}{\strut^\intercal}
%\newcommand{\T}[1]{\m{#1}^\top}
\newcommand{\T}[1]{\m{#1}^{\raisebox{1.5\depth}{\scaleto{\intercal}{5pt}}}}
\newcommand{\Ts}{^{\raisebox{1.5\depth}{\scaleto{\intercal}{5pt}}}}

% Orthogonal symbol
\newcommand{\G}[1]{\m{#1}\strut^{\rotatebox[origin=c]{180}{$\intercal$}}}
\newcommand{\Gs}{\strut^{\rotatebox[origin=c]{180}{$\intercal$}}}
% Inverse symbol
\newcommand{\inv}[1]{\m{#1}^{-1}}

\newcommand{\tr}[1]{\text{tr}\left(#1\right)}
\renewcommand{\det}[1]{\text{det}\left(#1\right)}
\renewcommand{\vec}[1]{\text{vec}\left(\boldsymbol{#1}\right)}

% Column space of a matrix
\newcommand{\Col}[1]{\mathcal{C}\left(\boldsymbol{\mathrm{#1}}\right)}
% Null space of a matrix
\newcommand{\Nul}[1]{\mathcal{N}\left(\boldsymbol{\mathrm{#1}}\right)}

% Correct f(x)dx 's d into straight font
\newcommand{\dd}{\mathrm{d}}
\newcommand{\D}{\mathrm{D}}

% Define capital Greek letters
\newcommand{\Alpha}{\mathrm{A}}
\newcommand{\Beta}{\mathrm{B}}
\newcommand{\Epsilon}{\mathrm{E}}
\newcommand{\Zeta}{\mathrm{Z}}
\newcommand{\Eta}{\mathrm{H}}
\newcommand{\Iota}{\mathrm{I}}
\newcommand{\Kappa}{\mathrm{K}}
\newcommand{\Mu}{\mathrm{M}}
\newcommand{\Nu}{\mathrm{N}}
\newcommand{\Omicron}{\mathrm{O}}
\newcommand{\Rho}{\mathrm{P}}
\newcommand{\Tau}{\mathrm{T}}
\newcommand{\Chi}{\mathrm{X}}

\newcommand{\degree}{^\circ}

% Define theorems, corollaries and lemmas:
\newtheorem{theorem}{Theorem}[section]
\newtheorem{corollary}{Corollary}[theorem]
\newtheorem{lemma}[theorem]{Lemma}

\theoremstyle{definition}
\newtheorem{definition}{Definition}[section]

\theoremstyle{remark}
\newtheorem*{remark}{Remark}

% Reduce gap between equations and text
\abovedisplayshortskip=0pt
\belowdisplayshortskip=0pt
\abovedisplayskip=0pt
\belowdisplayskip=0pt

% Coloured boxes
\usepackage{tcolorbox}
\tcbset{before upper={\parindent0in}} % No paragraph indentation within box
% Background knowledge
\definecolor{Postitblue}{RGB}{122,252,255}
\newtcolorbox{know}[1]{colback=Postitblue,colframe=Postitblue,title=\noindent\textcolor{black}{\textbf{#1}}}
% Post-it notes
\definecolor{Postitbuff}{RGB}{254,255,156}
\newtcolorbox{note}[1]{colback=Postitbuff,colframe=Postitbuff,title=\noindent\textcolor{black}{\textbf{#1}}}
% Caution
\definecolor{Postitpink}{RGB}{255,126,185}
\newtcolorbox{caution}[1]{colback=Postitpink,colframe=Postitpink,title=\noindent\textcolor{black}{\textbf{#1}}}

% Define commonly used computer package
% Convert pt to mm: s pt = s x 25.4/72.27
\newcommand{\cR}{\includegraphics[width=4.2175mm]{Figures/R.png}\ }
\newcommand{\CR}{\includegraphics[width=4.2175mm]{Figures/R.png}}

% tikz diagram: model output
\newcommand{\pres}[2]{\footnotesize$\underset{(#2)}{#1}$}
\newcommand{\press}[3]{${#1}^{#2}$}
%\newcommand{\press}[3]{\footnotesize$\underset{(#3)}{#1}^{#2}$}

%                                                                          %
%                                                                          %
%                                                                          %
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% End maths stuff %%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%% Always load hyperref as the last package
\usepackage[%
    colorlinks=true,          % I want to colour all my links
    linkcolor=red,            % I want cross-references to be in red
    anchorcolor=black,        % Keep anchors blackvar.names[which(var.names$Source=="QQQ_student")][,2]
    citecolor=blue,           % In-text-referencing is in blue
    urlcolor=blue,            % DOIs and URLs are in blue
    bookmarks=true,           % Generate bookmarks for PDF readers
    bookmarksopen=false,       % Expand all bookmarks as default
    bookmarksnumbered=true    % Keep section number in bookmarks
]{hyperref}

% Always load cleveref last last
\usepackage[nameinlink,noabbrev,capitalise]{cleveref}