DESCRIPTION

Package: locuszoomr
Title: Gene Locus Plot with Gene Annotations
Version: 0.3.5
Authors@R:
    c(person(given = "Myles",family = "Lewis",
    role = c("aut", "cre"),
    email = "myles.lewis@qmul.ac.uk",
    comment = c(ORCID = "0000-0001-9365-5345")))
BugReports: https://github.com/myles-lewis/locuszoomr/issues
URL: https://github.com/myles-lewis/locuszoomr
Description: Publication-ready regional gene locus plots similar to those produced by the web interface 'LocusZoom' <https://my.locuszoom.org>, but running locally in R. Genetic or genomic data with gene annotation tracks are plotted via R base graphics, 'ggplot2' or 'plotly', allowing flexibility and easy customisation including laying out multiple locus plots on the same page. It uses the 'LDlink' API <https://ldlink.nih.gov/?tab=apiaccess> to query linkage disequilibrium data from the 1000 Genomes Project and can overlay this on plots.
Language: en-gb
License: GPL (>= 3)
Encoding: UTF-8
Depends: R (>= 3.5)
biocViews:
Imports:
    AnnotationFilter,
    BiocGenerics,
    cowplot,
    dplyr,
    ensembldb,
    GenomeInfoDb,
    GenomicRanges,
    gggrid,
    ggplot2,
    ggrepel,
    graphics,
    grDevices,
    grid,
    IRanges,
    LDlinkR,
    memoise,
    plotly,
    rlang,
    rtracklayer,
    zoo
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Suggests:
    AnnotationHub,
    EnsDb.Hsapiens.v75,
    knitr,
    rmarkdown
VignetteBuilder: knitr