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<!DOCTYPE html>
<html>
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<title>MZmine 3 - Changelog</title>
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<h2>Changelog</h2>
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<div class="timeline timeline-simple changelog">
<div class="tm-body" style="padding-bottom:10px;">
<ol class="tm-items" id="timeline1">
<li>
<div class="tm-box">
<h4>3.2.0</h4> - <span class="release-date">August 13, 2022</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - Simple factor-of-lowest intensity mass detector (Robin Schmid)</li>
<li><span class="label label-info">Updated</span> - IMS expander improved memory and threading (Steffen Heuckeroth)</li>
<li><span class="label label-info">Updated</span> - Redesign ImageVisualizer (Robin Schmid)</li>
<li><span class="label label-info">Updated</span> - Speedup advanced mzML import (with mass detection for lower memory usage) 6x (Robin Schmid)</li>
<li><span class="label label-danger">Fixed</span> - imzML import (Robin Schmid)</li>
<li><span class="label label-danger">Fixed</span> - File type detection was too slow (Robin Schmid)</li>
<li><span class="label label-danger">Fixed</span> - Mass calibration setup (Olena Mokshyna)</li>
<li><span class="label label-danger">Fixed</span> - NIST MS search (Kevin Murray)</li>
<li><span class="label label-danger">Fixed</span> - Fix spectral deconvolution (Aleksandr Smirnov)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>3.1.0-beta</h4> - <span class="release-date">June 18, 2022</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - Metadata support (Kirill Ponomarov)</li>
<li><span class="label label-primary">Added</span> - Set location for taskmanager or hide (Robin Schmid)</li>
<li><span class="label label-primary">Added</span> - Spectral library search in batch wizard (Robin Schmid)</li>
<li><span class="label label-primary">Added</span> - LC + Image feature list aligner (Steffen Heuckeroth)</li>
<li><span class="label label-primary">Added</span> - Normalized images in feature table and export (Steffen Heuckeroth)</li>
<li><span class="label label-primary">Added</span> - Compound database match results in tab (Steffen Heuckeroth)</li>
<li><span class="label label-info">Updated</span> - Scan histogram (Robin Schmid)</li>
<li><span class="label label-info">Updated</span> - Harmonize style of spectra and chromatogram plots and raw data overview in general (Robin Schmid)</li>
<li><span class="label label-danger">Fixed</span> - Rows filter (Robin Schmid)</li>
<li><span class="label label-danger">Fixed</span> - Major netagive mode ions in IIN refinement (Robin Schmid)</li>
<li><span class="label label-danger">Fixed</span> - Same range gap filling (Steffen Heuckeroth)</li>
<li><span class="label label-danger">Fixed</span> - Ransac aligner (Steffen Heuckeroth)</li>
<li><span class="label label-danger">Fixed</span> - Baseline resolver (Steffen Heuckeroth)</li>
<li><span class="label label-danger">Fixed</span> - Linear normaizer and RT calibration (Steffen Heuckeroth)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>3.0.21-beta</h4> - <span class="release-date">March 9, 2022</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - PRM import from Bruker timsTOF tdf files (Steffen Heuckeroth)</li>
<li><span class="label label-primary">Added</span> - Error message on old project load (Steffen Heuckeroth)</li>
<li><span class="label label-info">Updated</span> - Update links to new documentation (Steffen Heuckeroth)</li>
<li><span class="label label-info">Updated</span> - Export ion identity edges for all selected feature lists with naming pattern (Amol Singh, sanbit876)</li>
<li><span class="label label-danger">Fixed</span> - Major adduct refinement for negative mode data (was deleting all IIN in negative mode) (Robin Schmid)</li>
<li><span class="label label-danger">Fixed</span> - Baseline cut-off resolver (Steffen Heuckeroth)</li>
<li><span class="label label-danger">Fixed</span> - Linear normalizer (Steffen Heuckeroth)</li>
<li><span class="label label-danger">Fixed</span> - RT calibration (Steffen Heuckeroth)</li>
<li><span class="label label-danger">Fixed</span> - RANSAC aligner (Steffen Heuckeroth)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>3.0.11-beta</h4> - <span class="release-date">March 9, 2022</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - Binning in IMS raw data overview (Steffen Heuckeroth)</li>
<li><span class="label label-primary">Added</span> - Add ion mobility to CSV export (legacy MZmine2 format; GNPS FBMN/IIMN)(Robin Schmid)</li>
<li><span class="label label-info">Updated</span> - Improve ion mobility segments data model (Steffen Heuckeroth)</li>
<li><span class="label label-info">Updated</span> - Sorting of features in feature resolver preview (Steffen Heuckeroth)</li>
<li><span class="label label-info">Updated</span> - Speed up feature resolver preview (Robin Schmid)</li>
<li><span class="label label-info">Updated</span> - Spectral library matching more performant, more options (Robin Schmid)</li>
<li><span class="label label-danger">Fixed</span> - Waters RAW import (select parent folder or drag and drop) (Robin Schmid)</li>
<li><span class="label label-danger">Fixed</span> - Zip data import (.mzML.zip and .mzML.gz files) (Steffen Heuckeroth)</li>
<li><span class="label label-danger">Fixed</span> - Feature lists default sorting by retention time (Robin Schmid)</li>
<li><span class="label label-danger">Fixed</span> - MS/MS scatter plot (Robin Schmid)</li>
<li><span class="label label-danger">Fixed</span> - Chart freeze on invalid paint scale range for empty data (Steffen Heuckeroth)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>3.0.0-beta</h4> - <span class="release-date">March 1, 2022</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - Advanced data and spectral library import (Robin Schmid)</li>
<li><span class="label label-primary">Added</span> - Batch wizard simplifying batch setup (Steffen Heuckeroth)</li>
<li><span class="label label-primary">Added</span> - Create batch from any feature list with applied methods (Steffen Heuckeroth)</li>
<li><span class="label label-primary">Added</span> - Raw data overview (Steffen Heuckeroth)</li>
<li><span class="label label-primary">Added</span> - IMS data support (Steffen Heuckeroth, Ansgar Korf)</li>
<li><span class="label label-primary">Added</span> - Native timsTOF-MS data support (Steffen Heuckeroth, Ansgar Korf)</li>
<li><span class="label label-primary">Added</span> - IMS feature data model (Steffen Heuckeroth)</li>
<li><span class="label label-primary">Added</span> - Mobility-MZ Visualizer plot (Steffen Heuckeroth)</li>
<li><span class="label label-primary">Added</span> - CCS-MZ Visualizer plot (Steffen Heuckeroth)</li>
<li><span class="label label-primary">Added</span> - CCS Calculation for TIMS, DTIMS, TWIMS (Steffen Heuckeroth)</li>
<li><span class="label label-primary">Added</span> - Mass defect rows filter (Steffen Heuckeroth)</li>
<li><span class="label label-primary">Added</span> - Feature list blank subtraction (Steffen Heuckeroth)</li>
<li><span class="label label-primary">Added</span> - Ion mobility trace builder (Ansgar Korf, Steffen Heuckeroth)</li>
<li><span class="label label-primary">Added</span> - Recursive IMS builder (Steffen Heuckeroth)</li>
<li><span class="label label-primary">Added</span> - Ims expander (Steffen Heuckeroth)</li>
<li><span class="label label-primary">Added</span> - Mobilogram smoothing (Steffen Heuckeroth)</li>
<li><span class="label label-primary">Added</span> - Mobilogram resolving (Steffen Heuckeroth)</li>
<li><span class="label label-primary">Added</span> - Mobilogram binning (Steffen Heuckeroth)</li>
<li><span class="label label-primary">Added</span> - IMS Gap filling (Steffen Heuckeroth)</li>
<li><span class="label label-primary">Added</span> - Loess smoothing algorithm (Steffen Heuckeroth)</li>
<li><span class="label label-primary">Added</span> - Comprehensive CSV data export (Robin Schmid)</li>
<li><span class="label label-primary">Added</span> - Ion Identity Molecular Networking (Robin Schmid)</li>
<li><span class="label label-primary">Added</span> - Isotope finder to detect possible isotope signals (Robin Schmid)</li>
<li><span class="label label-primary">Added</span> - 13C isotope filter (Robin Schmid)</li>
<li><span class="label label-primary">Added</span> - Options to keep all features with MS2 spectrum (Robin Schmid)</li>
<li><span class="label label-info">Updated</span> - Project save with small option (without data files) or portable (Steffen Heckeroth)</li>
<li><span class="label label-info">Updated</span> - Lipid identification modules (Ansgar Korf)</li>
<li><span class="label label-info">Updated</span> - Join aligner now multi-threaded (Steffen Heuckeroth, Robin Schmid)</li>
<li><span class="label label-info">Updated</span> - Gap-filling now multi-threaded (Robin Schmid)</li>
<li><span class="label label-info">Updated</span> - Speed gains and memory efficiency (Robin Schmid, Steffen Heuckeroth)</li>
<li><span class="label label-info">Updated</span> - Modernized and overhauled Graphical user interfaces (Roman Bushuiev, Steffen Heuckeroth, Robin Schmid)</li>
<li><span class="label label-info">Updated</span> - Feature data model (Robin Schmid)</li>
<li><span class="label label-info">Updated</span> - Feature raw model (Steffen Heuckeroth)</li>
<li><span class="label label-info">Updated</span> - Adapted compound database data model (Steffen Heuckeroth)</li>
<li><span class="label label-info">Updated</span> - Spectral library matching more performant, more options (Robin Schmid)</li>
<li><span class="label label-info">Updated</span> - Gaussian fit in isotope pattern preview (Steffen Heuckeroth)</li>
<li><span class="label label-danger">Fixed</span> - Harmonized ADAP chromatogram builder with other parts (Robin Schmid)</li>
<li><span class="label label-info">Updated</span> - Build pipeline (Tomáš Pluskal)</li>
<li><span class="label label-info">Updated</span> - Continuous integration and testing (Robin Schmid, Steffen Heuckeroth)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.53</h4> - <span class="release-date">December 13, 2019</span>
<ul class="list-unstyled">
<li><span class="label label-danger">Fixed</span> - Missing dependencies for ADAP modules (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Spectral database export module (Tomáš Pluskal)</li>
<li><span class="label label-info">Updated</span> - File open dialogs (Tomáš Pluskal)</li>
<li><span class="label label-info">Updated</span> - New icon for upcoming MZmine 3 (Tomáš Pluskal)</li> </ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.52</h4> - <span class="release-date">November 20, 2019</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - Manual graphical integration of peaks (Steffen Heuckeroth)</li>
<li><span class="label label-primary">Added</span> - Kovats Index extraction tool (Robin Schmid)</li>
<li><span class="label label-primary">Added</span> - GC-GNPS export (Robin Schmid)</li>
<li><span class="label label-danger">Fixed</span> - Exception in ADAP hierarchical clustering (Robin Schmid)</li>
<li><span class="label label-danger">Fixed</span> - jmzTab limit on number of columns (Nils Hoffmann)</li>
<li><span class="label label-danger">Fixed</span> - Missing scans from Waters instrument mzML files (Alex Smirnov)</li>
<li><span class="label label-info">Updated</span> - GNPS export module and documentation (Robin Schmid, Louis-Félix Nothias)</li>
<li><span class="label label-info">Updated</span> - Automatic spectra processing in the spectrum visualizer (Steffen Heuckeroth)</li>
<li><span class="label label-info">Updated</span> - Lipid search classes (Ansgar Korf)</li>
<li><span class="label label-info">Updated</span> - Formula information in Van Krevelen plots (Ansgar Korf)</li>
<li><span class="label label-info">Updated</span> - Spectra similarity check in Join Aligner (Ansgar Korf)</li>
<li><span class="label label-info">Updated</span> - Passwords not saved in project files, config file saved to home directory (Markus Fleischauer)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.51</h4> - <span class="release-date">September 3, 2019</span>
<ul class="list-unstyled">
<li><span class="label label-danger">Fixed</span> - A bug in spectra merging for SIRIUS export (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Added missing libraries for raw file import on Windows (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Added a missing manual.pdf and license to the release (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Made the Linux and macOS startup scripts executable again (Tomáš Pluskal)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.50</h4> - <span class="release-date">September 2, 2019</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - New 3D visualizer based on JavaFX (Akshaj Gupta)</li>
<li><span class="label label-primary">Added</span> - New build system using Gradle (Tomáš Pluskal)</li>
<li><span class="label label-primary">Added</span> - Minor GUI enhancements for task bar and dock (Tomáš Pluskal)</li>
<li><span class="label label-info">Updated</span> - Help windows (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Isotope pattern preview (Steffen Heuckeroth)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.42</h4> - <span class="release-date">August 22, 2019</span>
<ul class="list-unstyled">
<li><span class="label label-info">Updated</span> - MSP export to include more details (Alex Smirnov)</li>
<li><span class="label label-info">Updated</span> - Spectral database search (Robin Schmid)</li>
<li><span class="label label-danger">Fixed</span> - Isotope pattern viewing after chemical formula prediction (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Mass detection messages about centroid/profile spectra (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - ADAP aligner - progress, missing spectra (Alex Smirnov)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.41.2</h4> - <span class="release-date">July 28, 2019</span>
<ul class="list-unstyled">
<li><span class="label label-danger">Fixed</span> - SIRIUS search on Windows (Tomáš Pluskal)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.41.1</h4> - <span class="release-date">July 26, 2019</span>
<ul class="list-unstyled">
<li><span class="label label-danger">Fixed</span> - Loading & saving of project files (Tomáš Pluskal)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.41</h4> - <span class="release-date">July 25, 2019</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - Color blindness aware color palettes (Robin Schmid)</li>
<li><span class="label label-primary">Added</span> - Spectral DB search for single peak list row (Ansgar Korf)</li>
<li><span class="label label-primary">Added</span> - Kendrick mass defect filter (Ansgar Korf)</li>
<li><span class="label label-info">Updated</span> - ADAP aligner and wavelet deconvolution (Alex Smirnov, Du lab)</li>
<li><span class="label label-info">Updated</span> - Automatic spectra processing in the spectrum visualizer (Steffen Heuckeroth)</li>
<li><span class="label label-info">Updated</span> - Van Krevelen diagrams (Ansgar Korf)</li>
<li><span class="label label-danger">Fixed</span> - Spectra merging for SIRIUS and GNPS export (Kai Dürkhop)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.40.1</h4> - <span class="release-date">June 3, 2019</span>
<ul class="list-unstyled">
<li><span class="label label-danger">Fixed</span> - GNPS library submission/creation (Robin Schmid)</li>
<li><span class="label label-danger">Fixed</span> - Compatibility with Java 8 (Tomáš Pluskal)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.40</h4> - <span class="release-date">June 2, 2019</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - Support for MoNA, GNPS, NIST spectral database file formats (Robin Schmid)</li>
<li><span class="label label-primary">Added</span> - Support for JCAMP-DX spectral database file format (Ansgar Korf)</li>
<li><span class="label label-primary">Added</span> - Different spectral similarity algorithms for spectral search (Robin Schmid)</li>
<li><span class="label label-primary">Added</span> - Automatic spectra processing in the spectrum visualizer (Steffen Heuckeroth)</li>
<li><span class="label label-primary">Added</span> - Mirror plot for spectral database hit visualization (Ansgar Korf, Robin Schmid)</li>
<li><span class="label label-primary">Added</span> - Spectral matching in the spectrum visualizer (Ansgar Korf)</li>
<li><span class="label label-info">Updated</span> - Local MS2 library search (Ansgar Korf, Robin Schmid)</li>
<li><span class="label label-info">Updated</span> - MS2 spectra export to GNPS (Robin Schmid)</li>
<li><span class="label label-info">Updated</span> - Changed Student's t-test to ANOVA test (Alex Smirnov, Du lab)</li>
<li><span class="label label-info">Updated</span> - Spectra merging for SIRIUS and GNPS export (Kai Dürkhop)</li>
<li><span class="label label-info">Updated</span> - Performance improvement for centroid mass detector (Kai Dürkhop)</li>
<li><span class="label label-info">Updated</span> - New functions in Kendrick Mass plot (Ansgar Korf)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.39</h4> - <span class="release-date">April 28, 2019</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - Local MS2 library search (Robin Schmid)</li>
<li><span class="label label-primary">Added</span> - MS2 spectra export to GNPS (Robin Schmid)</li>
<li><span class="label label-primary">Added</span> - Utility module to associate MS2 spectra with detected features (Robin Schmid)</li>
<li><span class="label label-primary">Added</span> - Sparse hierarchical clustering for spectral deconvolution (Alex Smirnov, Du lab)</li>
<li><span class="label label-primary">Added</span> - Student's t-test and log fold-change for two groups (Alex Smirnov, Du lab)</li>
<li><span class="label label-info">Updated</span> - Peak list table - opening compound URL (Robin Schmid)</li>
<li><span class="label label-danger">Fixed</span> - Neutral loss filter (Steffen Heuckeroth, Robin Schmid)</li>
<li><span class="label label-danger">Fixed</span> - Avoid exporting empty scans for SIRIUS (Tomáš Pluskal)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.38</h4> - <span class="release-date">February 5, 2019</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - Diagnostic Fragmentation Filter plot (Shawn Hoogstra)</li>
<li><span class="label label-primary">Added</span> - Custom database search for spectra (Ansgar Korf)</li>
<li><span class="label label-primary">Added</span> - Multiple MS/MS spectra plot (Robin Schmid, Ansgar Korf)</li>
<li><span class="label label-info">Updated</span> - Spectra annotation for online DB and lipid search (Ansgar Korf)</li>
<li><span class="label label-info">Updated</span> - Isotope pattern preview tool (Steffen Heuckeroth)</li>
<li><span class="label label-info">Updated</span> - Spectra selection for SIRIUS export (Robin Schmid)</li>
<li><span class="label label-danger">Fixed</span> - Kendrick mass plots and Van Krevelen diagram labels and paint scales (Ansgar Korf)</li>
<li><span class="label label-danger">Fixed</span> - MassBank, PubChem, YMDB online DB search (Tomáš Pluskal)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.37</h4> - <span class="release-date">November 29, 2018</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - A selection of methods for m/z value calculation during chromatogram deconvolution (Robin Schmid)</li>
<li><span class="label label-primary">Added</span> - Direct submission to GNPS (Robin Schmid)</li>
<li><span class="label label-info">Updated</span> - Formula prediction sorting by mass deviation (Ansgar Korf)</li>
<li><span class="label label-danger">Fixed</span> - SIRIUS search (Tomáš Pluskal)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.36</h4> - <span class="release-date">November 16, 2018</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - Export of multiple mzML files (Robin Schmid)</li>
<li><span class="label label-primary">Added</span> - Raw data file merge function (Robin Schmid)</li>
<li><span class="label label-info">Updated</span> - SIRIUS search updated to new version(Tomáš Pluskal)</li>
<li><span class="label label-info">Updated</span> - Isotope pattern preview tool (Steffen Heuckeroth)</li>
<li><span class="label label-danger">Fixed</span> - A bug in ADAP Chromatogram builder (Alex Smirnov)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.35</h4> - <span class="release-date">October 26, 2018</span>
<ul class="list-unstyled">
<li><span class="label label-info">Updated</span> - ChemSpider search to new Web API (Tomáš Pluskal)</li>
<li><span class="label label-info">Updated</span> - Peak list row filter and duplicate peak filter (Robin Schmid)</li>
<li><span class="label label-danger">Fixed</span> - SIRIUS export (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Multithreaded peak finder in batch mode (Robin Schmid)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.34</h4> - <span class="release-date">September 19, 2018</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - SIRIUS/CSI-FingerID structure prediction module (Evgeniy Sorokin)</li>
<li><span class="label label-primary">Added</span> - Multi-threaded gap filling (Robin Schmid and Mingxun Wang)</li>
<li><span class="label label-primary">Added</span> - Isotope pattern preview (Steffen Heuckeroth)</li>
<li><span class="label label-primary">Added</span> - m/z histogram (Robin Schmid)</li>
<li><span class="label label-primary">Added</span> - Lipid search module (Ansgar Korf)</li>
<li><span class="label label-info">Updated</span> - JfreeChart plots (Robin Schmid)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.33</h4> - <span class="release-date">July 2, 2018</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - Spectral Deconvolution/Blind Source Separation method (Xiuxia Du lab)</li>
<li><span class="label label-info">Updated</span> - Targeted peak detection - added MS level (Andrius Chaleckis)</li>
<li><span class="label label-danger">Fixed</span> - HMDB search (Tomáš Pluskal)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.32</h4> - <span class="release-date">April 1, 2018</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - Hierarchical clustering aligner (Gauthier Boaglio)</li>
<li><span class="label label-primary">Added</span> - Quick search bars to peaklist table (Akshaj Gupta)</li>
<li><span class="label label-primary">Added</span> - Van-Krevelen diagrams (Ansgar Korf)</li>
<li><span class="label label-info">Updated</span> - Kendrick mass plots (Ansgar Korf)</li>
<li><span class="label label-danger">Fixed</span> - MetaCyc search in case no record is found (Tomáš Pluskal)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.31</h4> - <span class="release-date">February 11, 2018</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - Kendrick mass plots (Ansgar Korf)</li>
<li><span class="label label-primary">Added</span> - Lots of new features for visualization plots (Robin Schmid)</li>
<li><span class="label label-info">Updated</span> - Replaced PlantCyc search with MetaCyc using REST API (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Fixed access to MassBank Europe (Tomáš Pluskal)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.30</h4> - <span class="release-date">November 24, 2017</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - RCaller as an option for R backend (Gauthier Boaglio)</li>
<li><span class="label label-primary">Added</span> - Single feature export from peak list table for SIRIUS (Kai Dürkhop)</li>
<li><span class="label label-info">Updated</span> - Peak list SIRIUS export (Kai Dürkhop)</li>
<li><span class="label label-info">Updated</span> - Peak list GNPS export (Pieter Dorrestein lab)</li>
<li><span class="label label-danger">Fixed</span> - MS2 similarity search peaklist selection (Tim Fallon)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.29</h4> - <span class="release-date">September 21, 2017</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - A second module for GC-MS spectral deconvolution (Xiuxia Du lab)</li>
<li><span class="label label-primary">Added</span> - Added mzML and netcdf raw data export via MSDK (Tomáš Pluskal)</li>
<li><span class="label label-info">Updated</span> - MS2 similarity search (Tim Fallon)</li>
<li><span class="label label-info">Updated</span> - Sirius export (Kai Dürkhop)</li>
<li><span class="label label-info">Updated</span> - GNPS export (Pieter Dorrestein lab)</li>
<li><span class="label label-info">Updated</span> - CSV export with peak identifications (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - netCDF import for 32-bit precision files (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Peak area calculation in the chromatogram smoothing module (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Targeted peak detection module in case the input CSV file contains a byte order mark (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - HMDB online database search (Tomáš Pluskal)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.28</h4> - <span class="release-date">July 21, 2017</span>
<ul class="list-unstyled">
<li><span class="label label-info">Updated</span> - GNPS and Sirius export (Pieter Dorrestein lab)</li>
<li><span class="label label-danger">Fixed</span> - R-based modules using latest R release (Gauthier Boaglio)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.27</h4> - <span class="release-date">June 24, 2017</span>
<ul class="list-unstyled">
<li><span class="label label-info">Updated</span> - ADAP feature detection module (Xiuxia Du lab)</li>
<li><span class="label label-info">Updated</span> - MS/MS scan detection in chromatogram deconvolution (Pieter Dorrestein lab)</li>
<li><span class="label label-danger">Fixed</span> - File open dialog filters under JDK 8 (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Temporary file creating on certain Windows versions (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Temporary file locking on network filesystems (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Scatter plot tooltips (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Memory detection under Linux in different locale settings (Sergio Oller)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.26</h4> - <span class="release-date">May 10, 2017</span>
<ul class="list-unstyled">
<li><span class="label label-info">Updated</span> - GNPS and Sirius export options (Pieter Dorrestein lab)</li>
<li><span class="label label-info">Updated</span> - Chemical formular prediction, now much faster thanks to CDK update (Tomáš Pluskal)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.25</h4> - <span class="release-date">May 6, 2017</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - A new ADAP module for spectral deconvolution of GC/MS data (Xiuxia Du lab)</li>
<li><span class="label label-primary">Added</span> - GNPS and Sirius export options (Pieter Dorrestein lab)</li>
<li><span class="label label-info">Updated</span> - Peak list filter module (Pieter Dorrestein lab)</li>
<li><span class="label label-danger">Fixed</span> - CSV export in batch mode (Tomáš Pluskal)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.24</h4> - <span class="release-date">April 10, 2017</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - New ADAP modules for EIC construction and EIC peak picking (Xiuxia Du lab)</li>
<li><span class="label label-danger">Fixed</span> - A bug in spectrum visualizer (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - PubChem search module (Tomáš Pluskal)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.23</h4> - <span class="release-date">December 12, 2016</span>
<ul class="list-unstyled">
<li><span class="label label-danger">Fixed</span> - A bug in peak list row filter (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Version number (Tomáš Pluskal)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.22</h4> - <span class="release-date">December 9, 2016</span>
<ul class="list-unstyled">
<li><span class="label label-info">Updated</span> - MS2 similarity search (Tim Fallon)</li>
<li><span class="label label-danger">Fixed</span> - Metaboanalyst export format (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - CSV export with multiple IDs (Tomáš Pluskal)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.21</h4> - <span class="release-date">July 3, 2016</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - A simple module for feature comparison by MS2 similarity (Tim Fallon)</li>
<li><span class="label label-info">Updated</span> - Minor updates to CSV export (Gauthier Boaglio)</li>
<li><span class="label label-danger">Fixed</span> - A bug in reading some Waters RAW files (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Mac OS X script should work in case there is not JDK installed, only JRE (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Occasional exceptions in linear normalizer and scatter plot (Tomáš Pluskal)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.20</h4> - <span class="release-date">March 3, 2016</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - A "Round resample filter" to the scan by scan filtering methods (Gauthier Boaglio)</li>
<li><span class="label label-primary">Added</span> - Peak-to-peak comparison filter, e.g. by fold-change (Tim Fallon)</li>
<li><span class="label label-info">Updated</span> - Spectrum export dialog remembers last open directory (Tomáš Pluskal)</li>
<li><span class="label label-info">Updated</span> - Chemical formula prediction shows ppm errors (Tim Fallon)</li>
<li><span class="label label-info">Updated</span> - More options in peak list row filter (Tim Fallon)</li>
<li><span class="label label-info">Updated</span> - CSV export to handle multiple peaklists (Gauthier Boaglio)</li>
<li><span class="label label-danger">Fixed</span> - Polarity and precursor recognition for Thermo RAW files (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Peak shape component shows MS2 traces properly (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Saving of RT start and ends into project files (Tomáš Pluskal)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.19</h4> - <span class="release-date">February 1, 2016</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - MassBank.eu search (Tobias Schulze)</li>
<li><span class="label label-primary">Added</span> - Close all windows menu item (Tomáš Pluskal)</li>
<li><span class="label label-primary">Added</span> - Import of zipped and gzipped raw data files (Tomáš Pluskal)</li>
<li><span class="label label-info">Updated</span> - Import of multiple mzTab files (Tomáš Pluskal)</li>
<li><span class="label label-info">Updated</span> - Minor improvements in parameter setting components (Tomáš Pluskal)</li>
<li><span class="label label-info">Updated</span> - Chemical formula input more robust to whitespace (Tim Fallon)</li>
<li><span class="label label-info">Updated</span> - Chromatogram deconvolution can handle polarity switching data (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Speed issues when importing mzML files from network shares (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - startMZmine.bat failure when executed from a different folder (Gauthier Boaglio)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.18.3</h4> - <span class="release-date">January 15, 2016</span>
<ul class="list-unstyled">
<li><span class="label label-danger">Fixed</span> - A bug in mzML export (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - A bug in m/z range parameter component (Tomáš Pluskal)</li>
<li><span class="label label-info">Updated</span> - Numerical parameter components ignore whitespace (Tim Fallon)</li>
</ul>
<br/>
<h4>2.18.2</h4> - <span class="release-date">December 18, 2015</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - Option to export spectra to mzML from the spectra visualizer (Tim Fallon)</li>
<li><span class="label label-danger">Fixed</span> - Loading of mzML files that contain UV data (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Chromatogram builder on polarity-switching datasets (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Minor bugs in scatter plot, intensity plot, and PubChem search (Tomáš Pluskal)</li>
</ul>
<br/>
<h4>2.18.1</h4> - <span class="release-date">December 14, 2015</span>
<ul class="list-unstyled">
<li><span class="label label-danger">Fixed</span> - A bug in executing R-based modules, e.g. XCMS and CAMERA (Tomáš Pluskal)</li>
</ul>
<br/>
<h4>2.18</h4> - <span class="release-date">December 12, 2015</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - Peak selector component for parameter setup dialogs (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Batch mode processing of tasks that do not produce any new data (Tomáš Pluskal)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.17</h4> - <span class="release-date">September 24, 2015</span>
<ul class="list-unstyled">
<li><span class="label label-danger">Fixed</span> - Bug in heat map plot (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Bugs Thermo and Waters raw data import (Tomáš Pluskal)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.16</h4> - <span class="release-date">September 3, 2015</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - Option to export spectra to text formats (MGF, MSP & TXT) (Thomas F. Dyrlund)</li>
<li><span class="label label-primary">Added</span> - FWHM, Tailing factor and Asymmetry factor to peak lists and exports (Thomas F. Dyrlund)</li>
<li><span class="label label-primary">Added</span> - Peak filter module for filtering individual peaks in peak lists (Thomas F. Dyrlund)</li>
<li><span class="label label-info">Updated</span> - Progress tracking for project loading and saving (Tomáš Pluskal)</li>
<li><span class="label label-info">Updated</span> - Chromatogram builder parameters to include scan selection option (Tomáš Pluskal)</li>
<li><span class="label label-info">Updated</span> - Scan selector component to include scan definition option (Tomáš Pluskal)</li>
<li><span class="label label-info">Updated</span> - More options in Crop filter (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Issue with mzTab import and export (Thomas F. Dyrlund)</li>
<li><span class="label label-danger">Fixed</span> - Error in chromatogram builder in case scans are not sorted by RT (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Bugs in heat map plot (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Bugs in PCA plot (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Bugs in logratio plot (Thomas F. Dyrlund)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.15</h4> - <span class="release-date">August 4, 2015</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - RT start, RT end and # data points to the CSV and SQL exports (Thomas F. Dyrlund)</li>
<li><span class="label label-primary">Added</span> - EMF and EPS vector image save options to plots (Thomas F. Dyrlund)</li>
<li><span class="label label-primary">Added</span> - Tracking of MZmine module usage in Google Analytics (Thomas F. Dyrlund)</li>
<li><span class="label label-primary">Added</span> - Scan selector component, so methods can be applied to selected types of scans (e.g. only positive polarity) (Tomáš Pluskal)</li>
<li><span class="label label-primary">Added</span> - IDA visualizer module (Thomas F. Dyrlund)</li>
<li><span class="label label-info">Updated</span> - Rserve is now used for integration with R - this should fix many of the R issues and speed up analysis (Gauthier Boaglio)</li>
<li><span class="label label-info">Updated</span> - General clean-up of start-up scripts (Thomas F. Dyrlund)</li>
<li><span class="label label-info">Updated</span> - The CSV export can now export all identification results for a peak (Thomas F. Dyrlund)</li>
<li><span class="label label-danger">Fixed</span> - Issue with newly opened peak list tables being hidden behind main window (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Bugs in the heat map module (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Bug in standard compound normalizer (Thomas F. Dyrlund)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.14.2</h4> - <span class="release-date">April 14, 2015</span>
<ul class="list-unstyled">
<li><span class="label label-danger">Fixed</span> - Java3D dependency conflict in the 3D visualizer (Tomáš Pluskal)</li>
</ul>
<br/>
<h4>2.14.1</h4> - <span class="release-date">April 9, 2015</span>
<ul class="list-unstyled">
<li><span class="label label-danger">Fixed</span> - Version number was incorrectly reported as 0.0 (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Minor fixes in the TIC visualizer (Tomáš Pluskal)</li>
</ul>
<br/>
<h4>2.14</h4> - <span class="release-date">April 3, 2015</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - Option to highlight samples in plots (Thomas F. Dyrlund)</li>
<li><span class="label label-primary">Added</span> - Noise level cut-off to the targeted peak detection module (Thomas F. Dyrlund)</li>
<li><span class="label label-primary">Added</span> - Option to remove common prefix in names when importing raw data files (Thomas F. Dyrlund)</li>
<li><span class="label label-primary">Added</span> - Text search options to the row filter (Tomáš Pluskal)</li>
<li><span class="label label-primary">Added</span> - Workaround for the issue that editing of compound identity was not possible if some of the first 3 columns were hidden (Tomáš Pluskal)</li>
<li><span class="label label-info">Updated</span> - Chromatogram renamed to TIC, Base peak chromatogram, XIC and XIC (base peak) (Thomas F. Dyrlund)</li>
<li><span class="label label-danger">Fixed</span> - Bugs in peak duration calculations in the targeted peak detection and gap filling modules (Thomas F. Dyrlund)</li>
<li><span class="label label-danger">Fixed</span> - Error with the batch mode when using the row filter module (Thomas F. Dyrlund)</li>
<li><span class="label label-danger">Fixed</span> - Error with rounding of m/z ranges for XIC graphs (Thomas F. Dyrlund)</li>
<li><span class="label label-danger">Fixed</span> - Crash of Waters reader when function contains no scans (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Selection of data files or peak lists are kept after sorting (Tomáš Pluskal)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.13.1</h4> - <span class="release-date">February 9, 2015</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - Two new modules for sorting files and peak lists alphabetically (Tomáš Pluskal)</li>
<li><span class="label label-primary">Added</span> - Tool to strip extensions from raw data file names (Thomas F. Dyrlund)</li>
<li><span class="label label-info">Updated</span> - 2D rendering of molecules was improved in database search (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Severe bug in project loading (precursor m/z values were lost) (Tomáš Pluskal)</li>
</ul>
<br/>
<h4>2.13</h4> - <span class="release-date">February 3, 2015</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - Ability to read Waters RAW folders on Windows (Tomáš Pluskal)</li>
<li><span class="label label-primary">Added</span> - Scan polarity is now recognized and indicated in the GUI (Tomáš Pluskal)</li>
<li><span class="label label-primary">Added</span> - Import and export from/to mzTab files (Thomas F. Dyrlund)</li>
<li><span class="label label-info">Updated</span> - Thermo RAW file import does not require installation of MSFileReader anymore (Tomáš Pluskal)</li>
<li><span class="label label-info">Updated</span> - Java3D installation is not required anymore (Tomáš Pluskal)</li>
<li><span class="label label-info">Updated</span> - Better recognition of centroided/profile spectra (Tomáš Pluskal)</li>
<li><span class="label label-info">Updated</span> - Improved SQL database export (Thomas F. Dyrlund)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.12</h4> - <span class="release-date">December 2, 2014</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - Option to sort raw data files or peak lists alphabetically (Tomáš Pluskal)</li>
<li><span class="label label-primary">Added</span> - New algorithms in the Baseline correction module (Gauthier Boaglio)</li>
<li><span class="label label-primary">Added</span> - MZmine now automatically checks for newer versions (Thomas F. Dyrlund)</li>
<li><span class="label label-info">Updated</span> - Improved reporting in the startMZmine script (Tomáš Pluskal)</li>
<li><span class="label label-info">Updated</span> - Improved reporting of errors in case of problems with connection to R (Thomas F. Dyrlund)</li>
<li><span class="label label-info">Updated</span> - Improved zooming options in TIC visualizer (Thomas F. Dyrlund)</li>
<li><span class="label label-danger">Fixed</span> - Windows now remember their sizes and positions (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Bug that caused freezing when reading certain types of mzML files (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Bug in Targeted peak detection module that caused peak areas to be negative (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Bugs in Manual peak picker (Thomas F. Dyrlund)</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.11</h4> - <span class="release-date">August 15, 2014</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - New 2D peak detection module called GridMass (Victor Trevino)</li>
<li><span class="label label-primary">Added</span> - Option to export charges to the CSV export module (Tomáš Pluskal)</li>
<li><span class="label label-info">Updated</span> - GUI changed from MDI style to multi-window style, to support operation on multiple screens (Tomáš Pluskal)</li>
<li><span class="label label-info">Updated</span> - The online search modules to reflect the current database websites (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Bug in Join Aligner where the m/z weight variable was ignored (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Operation of Targeted peak detection in batch mode (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Export of peak duration in the CSV export module (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Reading precursor charge from newer versions of Thermo RAW files (Tomáš Pluskal)</li>
<li><span class="label label-danger">Fixed</span> - Operation of Dataset filtering module in batch mode (Gauthier Boaglio)</li>
<li><span class="label label-danger">Fixed</span> - Steps reordering in the batch setup (Gauthier Boaglio)</li>
<li><span class="label label-danger">Fixed</span> - Peak area calculation in the Peak extender module (Gauthier Boaglio)</li>
</ul>
</div>
</li>
</ol>
</div>
</div>
<div id="showAllDiv">
<p style="text-align:center;"><a href="#timeline2" class="btn btn-primary" onclick="document.getElementById('timeline1').innerHTML=document.getElementById('timeline1').innerHTML+document.getElementById('timeline2').innerHTML;document.getElementById('showAllDiv').innerHTML='';" style="font-size:18px;">Show the changelog prior to version 2.11</a></p><br/><br/>
</div>
<div class="timeline timeline-simple changelog" style="display:none;">
<div class="tm-body" style="padding-top:0px;">
<ol class="tm-items" id="timeline2">
<li>
<div class="tm-box">
<h4>2.10</h4> - <span class="release-date">October 1, 2012</span>
<ul class="list-unstyled">
<li><span class="label label-info">Updated</span> - The HMDB search module to reflect the changes in the HMDB website</li>
<li><span class="label label-info">Updated</span> - KEGG search to use the new REST API instead of the obsolete SOAP API</li>
<li><span class="label label-info">Updated</span> - Visualization tool for hierarchical clustering</li>
<li><span class="label label-danger">Fixed</span> - Exception in METLIN search when no results are found</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.9.1</h4> - <span class="release-date">June 22, 2012</span>
<ul class="list-unstyled">
<li><span class="label label-danger">Fixed</span> - Opening of certain mzML files that do not have an id attribute</li>
<li><span class="label label-danger">Fixed</span> - Crashing of MZmine when R is not installed and R-based modules are invoked</li>
<li><span class="label label-danger">Fixed</span> - Bugs in the modules for neutral loss plot, complex search and formula search</li>
</ul>
<br/>
<h4>2.9.0</h4> - <span class="release-date">June 4, 2012</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - XCMS's wavelet algorithm to the chromatogram deconvolution module</li>
<li><span class="label label-primary">Added</span> - Bioconductor's CAMERA package for identification of related peaks</li>
<li><span class="label label-danger">Fixed</span> - Saving & loading of projects larger than 4GB</li>
<li><span class="label label-danger">Fixed</span> - Exception appearing when individual peaks were plotted in 3D visualizer</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.8</h4> - <span class="release-date">April 23, 2012</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - Copy & paste feature for peak identities</li>
<li><span class="label label-info">Updated</span> - Improvements in the targeted peak detection module</li>
<li><span class="label label-info">Updated</span> - Improvements in the adduct search module (customized list of adducts)</li>
<li><span class="label label-danger">Fixed</span> - Connection to the PlantCyc database was fixed</li>
</ul>
</div>
</li>
<li>
<div class="tm-box">
<h4>2.7.2</h4> - <span class="release-date">March 29, 2012</span>
<ul class="list-unstyled">
<li><span class="label label-danger">Fixed</span> - Bug in isotope pattern comparison algorithm</li>
</ul>
<br/>
<h4>2.7.1</h4> - <span class="release-date">March 28, 2012</span>
<ul class="list-unstyled">
<li><span class="label label-danger">Fixed</span> - Bug that caused an error when opening projects saved with version 2.7</li>
<li><span class="label label-danger">Fixed</span> - Bug in METLIN database search</li>
</ul>
<br/>
<h4>2.7</h4> - <span class="release-date">March 21, 2012</span>
<ul class="list-unstyled">
<li><span class="label label-primary">Added</span> - Legend can be hidden in the TIC visualizer</li>
<li><span class="label label-info">Updated</span> - MZmine is now built using Maven instead of Ant</li>
<li><span class="label label-info">Updated</span> - m/z tolerance can be specified as both absolute (m/z) and relative (ppm) values</li>
<li><span class="label label-danger">Fixed</span> - Various bugs in GUI and reading of mzML files</li>
</ul>
<br/>
</div>
</li>