Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

t-SNE plot for NMF group #2

Closed
naikai opened this issue Jun 6, 2016 · 3 comments
Closed

t-SNE plot for NMF group #2

naikai opened this issue Jun 6, 2016 · 3 comments

Comments

@naikai
Copy link
Owner

naikai commented Jun 6, 2016

Add t-SNE plot next to NMF identified group results so that user can quickly get a sense of how the results look like

@naikai
Copy link
Owner Author

naikai commented Jun 7, 2016

http://shiny.rstudio.com/articles/action-buttons.html

Pattern 3 - Dueling buttons
To build several action buttons that control the same object, combine observeEvent() calls with reactiveValues().

@naikai
Copy link
Owner Author

naikai commented Jun 7, 2016

Now needs to implement this

https://plot.ly/r/shiny-coupled-events/

So that we can select samples from the datatable, color samples on the scatter plot.

Also, select (box select) sample on the scatter plot, highlights the corresponding samples in the datatable

@naikai
Copy link
Owner Author

naikai commented Jun 8, 2016

Done.

Implemented by using ggplot + ggplotly since plot_ly(type = 'scattergl') still has problem.
Already report an issue to plotly package : #624
It shouldn't be a problem to useggplot for now since most of the time we get less than 1000 samples, but we will definitely need to fix it for gene-gene scatter plot.

@naikai naikai closed this as completed Jun 8, 2016
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant