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Bump the pip-dependencies group across 1 directory with 10 updates #253

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@dependabot dependabot bot commented on behalf of github Oct 1, 2024

Bumps the pip-dependencies group with 10 updates in the / directory:

Package From To
numpy 2.0.1 2.0.2
netcdf4 1.7.1.post1 1.7.1.post2
pytest 8.3.2 8.3.3
ruff 0.5.5 0.6.8
black 24.4.2 24.8.0
mypy 1.11.1 1.11.2
mkdocs 1.6.0 1.6.1
mkdocstrings 0.25.2 0.26.1
mkdocs-jupyter 0.24.8 0.25.0
mkdocs-material 9.5.30 9.5.39

Updates numpy from 2.0.1 to 2.0.2

Release notes

Sourced from numpy's releases.

NumPy 2.0.2 release (Aug 26, 2024)

NumPy 2.0.2 Release Notes

NumPy 2.0.2 is a maintenance release that fixes bugs and regressions discovered after the 2.0.1 release.

The Python versions supported by this release are 3.9-3.12.

Contributors

A total of 13 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

  • Bruno Oliveira +
  • Charles Harris
  • Chris Sidebottom
  • Christian Heimes +
  • Christopher Sidebottom
  • Mateusz Sokół
  • Matti Picus
  • Nathan Goldbaum
  • Pieter Eendebak
  • Raghuveer Devulapalli
  • Ralf Gommers
  • Sebastian Berg
  • Yair Chuchem +

Pull requests merged

A total of 19 pull requests were merged for this release.

  • #27000: REL: Prepare for the NumPy 2.0.1 release [wheel build]
  • #27001: MAINT: prepare 2.0.x for further development
  • #27021: BUG: cfuncs.py: fix crash when sys.stderr is not available
  • #27022: DOC: Fix migration note for alltrue and sometrue
  • #27061: BUG: use proper input and output descriptor in array_assign_subscript...
  • #27073: BUG: Mirror VQSORT_ENABLED logic in Quicksort
  • #27074: BUG: Bump Highway to latest master
  • #27077: BUG: Off by one in memory overlap check
  • #27122: BUG: Use the new npyv_loadable_stride_ functions for ldexp and...
  • #27126: BUG: Bump Highway to latest
  • #27128: BUG: add missing error handling in public_dtype_api.c
  • #27129: BUG: fix another cast setup in array_assign_subscript
  • #27130: BUG: Fix building NumPy in FIPS mode
  • #27131: BLD: update vendored Meson for cross-compilation patches
  • #27146: MAINT: Scipy openblas 0.3.27.44.4
  • #27151: BUG: Do not accidentally store dtype metadata in np.save
  • #27195: REV: Revert undef I and document it
  • #27213: BUG: Fix NPY_RAVEL_AXIS on backwards compatible NumPy 2 builds
  • #27279: BUG: Fix array_equal for numeric and non-numeric scalar types

... (truncated)

Commits
  • 854252d Merge pull request #27280 from charris/prepare-2.0.2
  • cffa071 REL: Prepare for the NumPy 2.0.2 release [wheel build]
  • 1693029 Merge pull request #27279 from charris/backport-27275
  • da9f9c3 BUG: Fix array_equal for numeric and non-numeric scalar types
  • ee1cf96 Merge pull request #27213 from charris/backport-27202
  • 49dec35 BUG: Fix NPY_RAVEL_AXIS on backwards compatible NumPy 2 builds
  • be56ae2 Merge pull request #27195 from charris/backport-27182
  • 75b039c REV: Revert undef I and document it
  • 428e2ba Merge pull request #27151 from charris/backport-27143
  • 451516d BUG: Do not accidentally store dtype metadata in np.save
  • Additional commits viewable in compare view

Updates netcdf4 from 1.7.1.post1 to 1.7.1.post2

Commits

Updates pytest from 8.3.2 to 8.3.3

Release notes

Sourced from pytest's releases.

8.3.3

pytest 8.3.3 (2024-09-09)

Bug fixes

  • #12446: Avoid calling @property (and other instance descriptors) during fixture discovery -- by asottile{.interpreted-text role="user"}

  • #12659: Fixed the issue of not displaying assertion failure differences when using the parameter --import-mode=importlib in pytest>=8.1.

  • #12667: Fixed a regression where type change in [ExceptionInfo.errisinstance]{.title-ref} caused [mypy]{.title-ref} to fail.

  • #12744: Fixed typing compatibility with Python 3.9 or less -- replaced [typing.Self]{.title-ref} with [typing_extensions.Self]{.title-ref} -- by Avasam{.interpreted-text role="user"}

  • #12745: Fixed an issue with backslashes being incorrectly converted in nodeid paths on Windows, ensuring consistent path handling across environments.

  • #6682: Fixed bug where the verbosity levels where not being respected when printing the "msg" part of failed assertion (as in assert condition, msg).

  • #9422: Fix bug where disabling the terminal plugin via -p no:terminal would cause crashes related to missing the verbose option.

    -- by GTowers1{.interpreted-text role="user"}

Improved documentation

  • #12663: Clarify that the [pytest_deselected]{.title-ref} hook should be called from [pytest_collection_modifyitems]{.title-ref} hook implementations when items are deselected.
  • #12678: Remove erroneous quotes from [tmp_path_retention_policy]{.title-ref} example in docs.

Miscellaneous internal changes

  • #12769: Fix typos discovered by codespell and add codespell to pre-commit hooks.
Commits

Updates ruff from 0.5.5 to 0.6.8

Release notes

Sourced from ruff's releases.

0.6.8

Release Notes

Preview features

  • Remove unnecessary parentheses around match case clauses (#13510)
  • Parenthesize overlong if guards in match..case clauses (#13513)
  • Detect basic wildcard imports in ruff analyze graph (#13486)
  • [pylint] Implement boolean-chained-comparison (R1716) (#13435)

Rule changes

  • [lake8-simplify] Detect SIM910 when using variadic keyword arguments, i.e., **kwargs (#13503)
  • [pyupgrade] Avoid false negatives with non-reference shadowed bindings of loop variables (UP028) (#13504)

Bug fixes

  • Detect tuples bound to variadic positional arguments i.e. *args (#13512)
  • Exit gracefully on broken pipe errors (#13485)
  • Avoid panic when analyze graph hits broken pipe (#13484)

Performance

  • Reuse BTreeSets in module resolver (#13440)
  • Skip traversal for non-compound statements (#13441)

Contributors

Install ruff 0.6.8

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://github.com/astral-sh/ruff/releases/download/0.6.8/ruff-installer.sh | sh

Install prebuilt binaries via powershell script

... (truncated)

Changelog

Sourced from ruff's changelog.

0.6.8

Preview features

  • Remove unnecessary parentheses around match case clauses (#13510)
  • Parenthesize overlong if guards in match..case clauses (#13513)
  • Detect basic wildcard imports in ruff analyze graph (#13486)
  • [pylint] Implement boolean-chained-comparison (R1716) (#13435)

Rule changes

  • [lake8-simplify] Detect SIM910 when using variadic keyword arguments, i.e., **kwargs (#13503)
  • [pyupgrade] Avoid false negatives with non-reference shadowed bindings of loop variables (UP028) (#13504)

Bug fixes

  • Detect tuples bound to variadic positional arguments i.e. *args (#13512)
  • Exit gracefully on broken pipe errors (#13485)
  • Avoid panic when analyze graph hits broken pipe (#13484)

Performance

  • Reuse BTreeSets in module resolver (#13440)
  • Skip traversal for non-compound statements (#13441)

0.6.7

Preview features

  • Add Python version support to ruff analyze CLI (#13426)
  • Add exclude support to ruff analyze (#13425)
  • Fix parentheses around return type annotations (#13381)

Rule changes

  • [pycodestyle] Fix: Don't autofix if the first line ends in a question mark? (D400) (#13399)

Bug fixes

  • Respect lint.exclude in ruff check --add-noqa (#13427)

Performance

  • Avoid tracking module resolver files in Salsa (#13437)
  • Use forget for module resolver database (#13438)

0.6.6

Preview features

... (truncated)

Commits
  • ae39ce5 Bump version to 0.6.8 (#13522)
  • ff2d214 Don't skip over imports and other nodes containing nested statements in impor...
  • 9442cd8 Parenthesize match..case if guards (#13513)
  • 8012707 Align formatting of patterns in match-cases with expression formatting in cla...
  • d7ffe46 Disable the typeset plugin (#13517)
  • 7c83af4 red-knot: Implement the not operator for all Type variants (#13432)
  • bbb044e Detect tuples bound to variadic positional arguments i.e. *args (#13512)
  • 4810652 Avoid UP028 false negatives with non-reference shadowed bindings of loop vari...
  • 11f06e0 Detect SIM910 when using variadic keyword arguments, i.e., **kwargs (#13503)
  • f27a8b8 [internal] ComparableExpr (f)strings and bytes made invariant under concate...
  • Additional commits viewable in compare view

Updates black from 24.4.2 to 24.8.0

Release notes

Sourced from black's releases.

24.8.0

Stable style

  • Fix crash when # fmt: off is used before a closing parenthesis or bracket. (#4363)

Packaging

  • Packaging metadata updated: docs are explictly linked, the issue tracker is now also linked. This improves the PyPI listing for Black. (#4345)

Parser

  • Fix regression where Black failed to parse a multiline f-string containing another multiline string (#4339)
  • Fix regression where Black failed to parse an escaped single quote inside an f-string (#4401)
  • Fix bug with Black incorrectly parsing empty lines with a backslash (#4343)
  • Fix bugs with Black's tokenizer not handling \{ inside f-strings very well (#4422)
  • Fix incorrect line numbers in the tokenizer for certain tokens within f-strings (#4423)

Performance

  • Improve performance when a large directory is listed in .gitignore (#4415)

Blackd

  • Fix blackd (and all extras installs) for docker container (#4357)
Changelog

Sourced from black's changelog.

24.8.0

Stable style

  • Fix crash when # fmt: off is used before a closing parenthesis or bracket. (#4363)

Packaging

  • Packaging metadata updated: docs are explictly linked, the issue tracker is now also linked. This improves the PyPI listing for Black. (#4345)

Parser

  • Fix regression where Black failed to parse a multiline f-string containing another multiline string (#4339)
  • Fix regression where Black failed to parse an escaped single quote inside an f-string (#4401)
  • Fix bug with Black incorrectly parsing empty lines with a backslash (#4343)
  • Fix bugs with Black's tokenizer not handling \{ inside f-strings very well (#4422)
  • Fix incorrect line numbers in the tokenizer for certain tokens within f-strings (#4423)

Performance

  • Improve performance when a large directory is listed in .gitignore (#4415)

Blackd

  • Fix blackd (and all extras installs) for docker container (#4357)
Commits
  • b965c2a Prepare release 24.8.0 (#4426)
  • 9ccf279 Document find_project_root ignoring pyproject.toml without [tool.black]...
  • 14b6e61 fix: Enhace black efficiently to skip directories listed in .gitignore (#4415)
  • b1c4dd9 fix: respect braces better in f-string parsing (#4422)
  • 4b4ae43 Fix incorrect linenos on fstring tokens with escaped newlines (#4423)
  • 7fa1faf docs: fix the installation command of extra for blackd (#4413)
  • 8827acc Bump sphinx from 7.3.7 to 7.4.0 in /docs (#4404)
  • b0da11d Bump furo from 2024.5.6 to 2024.7.18 in /docs (#4409)
  • 721dff5 fix: avoid formatting backslash strings inside f-strings (#4401)
  • 7e2afc9 Update actions/checkout to v4 to stop node deprecation warnings (#4379)
  • Additional commits viewable in compare view

Updates mypy from 1.11.1 to 1.11.2

Commits
  • 789f02c Bump version to 1.11.2
  • 917cc75 An alternative fix for a union-like literal string (#17639)
  • 7d805b3 Unwrap TypedDict item types before storing (#17640)
  • 32675dd Revert "Fix Literal strings containing pipe characters" (#17638)
  • 778542b Revert "Fix RawExpressionType.accept crash with --cache-fine-grained" (#1...
  • 14ab742 Bump version to 1.11.2+dev
  • See full diff in compare view

Updates mkdocs from 1.6.0 to 1.6.1

Release notes

Sourced from mkdocs's releases.

1.6.1

Version 1.6.1 (Friday 30th August, 2024)

Fixed

  • Fix build error when environment variable SOURCE_DATE_EPOCH=0 is set. #3795
  • Fix build error when mkdocs_theme.yml config is empty. #3700
  • Support python -W and PYTHONWARNINGS instead of overriding the configuration. #3809
  • Support running with Docker under strict mode, by removing 0.0.0.0 dev server warning. #3784
  • Drop unnecessary changefreq from sitemap.xml. #3629
  • Fix JavaScript console error when closing menu dropdown. #3774
  • Fix JavaScript console error that occur on repeated clicks. #3730
  • Fix JavaScript console error that can occur on dropdown selections. #3694

Added

  • Added translations for Dutch. #3804
  • Added and updated translations for Chinese (Simplified). #3684
Commits

Updates mkdocstrings from 0.25.2 to 0.26.1

Release notes

Sourced from mkdocstrings's releases.

0.26.1

0.26.1 - 2024-09-06

Compare with 0.26.0

Bug Fixes

  • Instantiate config of the autorefs plugin when it is not enabled by the user (db2ab34 by Timothée Mazzucotelli). Issue-autorefs#57

0.26.0

0.26.0 - 2024-09-02

Compare with 0.25.2

Build

  • Upgrade Python-Markdown lower bound to 3.6 (28565f9 by Timothée Mazzucotelli).

Dependencies

  • Depend on mkdocs-autorefs v1 (33aa573 by Timothée Mazzucotelli).

Features

Changelog

Sourced from mkdocstrings's changelog.

0.26.1 - 2024-09-06

Compare with 0.26.0

Bug Fixes

  • Instantiate config of the autorefs plugin when it is not enabled by the user (db2ab34 by Timothée Mazzucotelli). Issue-autorefs#57

0.26.0 - 2024-09-02

Compare with 0.25.2

Build

  • Upgrade Python-Markdown lower bound to 3.6 (28565f9 by Timothée Mazzucotelli).

Dependencies

  • Depend on mkdocs-autorefs v1 (33aa573 by Timothée Mazzucotelli).

Features

Commits
  • 651d176 chore: Prepare release 0.26.1
  • db2ab34 fix: Instantiate config of the autorefs plugin when it is not enabled by the ...
  • a65035a docs: Clarify that Installation section
  • b1aa042 chore: Prepare release 0.26.0
  • b63e726 feat: Allow hooking into autorefs when converting Markdown docstrings
  • 3c878b7 chore: Upgrade mkdocs-redirects lower bound to avoid deprecation warning
  • 28565f9 build: Upgrade Python-Markdown lower bound to 3.6
  • 52fad11 style: Format
  • c6ca522 docs: Fix dead link
  • 8041ef3 docs: Update code highlight lines
  • Additional commits viewable in compare view

Updates mkdocs-jupyter from 0.24.8 to 0.25.0

Commits

Updates mkdocs-material from 9.5.30 to 9.5.39

Release notes

Sourced from mkdocs-material's releases.

mkdocs-material-9.5.39

  • Fixed #7226: not staying on page when using mike's canonical versioning

Thanks go to @​ilyagr for their contributions

mkdocs-material-9.5.38

  • Added Albanian translations

Thanks go to @​gerardkraja for their contributions

mkdocs-material-9.5.37

  • Added 4th and 5th level ordered list styles
  • Fixed #7548: Tags have no spacing in search

mkdocs-material-9.5.36

  • Fixed #7544: Social cards incorrectly rendering HTML entities
  • Fixed #7542: Improved support for setting custom list styles

mkdocs-material-9.5.35

  • Fixed #7498: Search not showing for Vietnamese language

mkdocs-material-9.5.34

  • Updated Mermaid.js to version 11 (latest)

Thanks go to @​manselmi for their contributions

mkdocs-material-9.5.33

  • Fixed #7453: Incorrect position of tooltip when sorting table

mkdocs-material-9.5.32

  • Fixed RXSS vulnerability via deep link in search results
  • Added support for fetching latest release from GitLab

Thanks go to @​joaopalmeiro for their contributions

mkdocs-material-9.5.31

  • Fixed #7405: DockerHub missing images > 9.5.27 due to change in Alpine/APK
Changelog

Sourced from mkdocs-material's changelog.

mkdocs-material-9.5.39+insiders-4.53.14 (2024-09-29)

  • Fixed #7567: Empty headlines when using typeset plugin with anchorlinks

mkdocs-material-9.5.39 (2024-09-29)

  • Fixed #7226: not staying on page when using mike's canonical versioning

mkdocs-material-9.5.38 (2024-09-26)

  • Added Albanian translations

mkdocs-material-9.5.37 (2024-09-25)

  • Added 4th and 5th level ordered list styles
  • Fixed #7548: Tags have no spacing in search

mkdocs-material-9.5.36 (2024-09-21)

  • Fixed #7544: Social cards incorrectly rendering HTML entities
  • Fixed #7542: Improved support for setting custom list styles

mkdocs-material-9.5.35 (2024-09-18)

  • Fixed #7498: Search not showing for Vietnamese language

mkdocs-material-9.5.34+insiders-4.53.13 (2024-09-14)

  • Fixed #7520: Social plugin errors for generated files (MkDocs 1.6+)

mkdocs-material-9.5.34 (2024-08-31)

  • Updated Mermaid.js to version 11 (latest)

mkdocs-material-9.5.33 (2024-08-23)

  • Fixed #7453: Incorrect position of tooltip when sorting table

mkdocs-material-9.5.32 (2024-08-19)

  • Fixed RXSS vulnerability via deep link in search results
  • Added support for fetching latest release from GitLab

mkdocs-material-9.5.31+insiders-4.53.12 (2024-08-02)

  • Fixed #7410: Instant previews jump on content tabs with anchor links
  • Fixed #7408: Instant previews jump on content tabs

mkdocs-material-9.5.31 (2024-08-02)

... (truncated)

Commits

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📚 Documentation preview 📚: https://ncompare--253.org.readthedocs.build/en/253/

Bumps the pip-dependencies group with 10 updates in the / directory:

| Package | From | To |
| --- | --- | --- |
| [numpy](https://github.com/numpy/numpy) | `2.0.1` | `2.0.2` |
| [netcdf4](https://github.com/Unidata/netcdf4-python) | `1.7.1.post1` | `1.7.1.post2` |
| [pytest](https://github.com/pytest-dev/pytest) | `8.3.2` | `8.3.3` |
| [ruff](https://github.com/astral-sh/ruff) | `0.5.5` | `0.6.8` |
| [black](https://github.com/psf/black) | `24.4.2` | `24.8.0` |
| [mypy](https://github.com/python/mypy) | `1.11.1` | `1.11.2` |
| [mkdocs](https://github.com/mkdocs/mkdocs) | `1.6.0` | `1.6.1` |
| [mkdocstrings](https://github.com/mkdocstrings/mkdocstrings) | `0.25.2` | `0.26.1` |
| [mkdocs-jupyter](https://github.com/danielfrg/mkdocs-jupyter) | `0.24.8` | `0.25.0` |
| [mkdocs-material](https://github.com/squidfunk/mkdocs-material) | `9.5.30` | `9.5.39` |



Updates `numpy` from 2.0.1 to 2.0.2
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.0.1...v2.0.2)

Updates `netcdf4` from 1.7.1.post1 to 1.7.1.post2
- [Release notes](https://github.com/Unidata/netcdf4-python/releases)
- [Changelog](https://github.com/Unidata/netcdf4-python/blob/master/Changelog)
- [Commits](Unidata/netcdf4-python@v1.7.1.post1...v1.7.1.post2)

Updates `pytest` from 8.3.2 to 8.3.3
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@8.3.2...8.3.3)

Updates `ruff` from 0.5.5 to 0.6.8
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.5.5...0.6.8)

Updates `black` from 24.4.2 to 24.8.0
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](psf/black@24.4.2...24.8.0)

Updates `mypy` from 1.11.1 to 1.11.2
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](python/mypy@v1.11.1...v1.11.2)

Updates `mkdocs` from 1.6.0 to 1.6.1
- [Release notes](https://github.com/mkdocs/mkdocs/releases)
- [Commits](mkdocs/mkdocs@1.6.0...1.6.1)

Updates `mkdocstrings` from 0.25.2 to 0.26.1
- [Release notes](https://github.com/mkdocstrings/mkdocstrings/releases)
- [Changelog](https://github.com/mkdocstrings/mkdocstrings/blob/main/CHANGELOG.md)
- [Commits](mkdocstrings/mkdocstrings@0.25.2...0.26.1)

Updates `mkdocs-jupyter` from 0.24.8 to 0.25.0
- [Changelog](https://github.com/danielfrg/mkdocs-jupyter/blob/main/CHANGELOG.md)
- [Commits](danielfrg/mkdocs-jupyter@0.24.8...0.25.0)

Updates `mkdocs-material` from 9.5.30 to 9.5.39
- [Release notes](https://github.com/squidfunk/mkdocs-material/releases)
- [Changelog](https://github.com/squidfunk/mkdocs-material/blob/master/CHANGELOG)
- [Commits](squidfunk/mkdocs-material@9.5.30...9.5.39)

---
updated-dependencies:
- dependency-name: numpy
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pip-dependencies
- dependency-name: netcdf4
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pip-dependencies
- dependency-name: pytest
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: pip-dependencies
- dependency-name: ruff
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: pip-dependencies
- dependency-name: black
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: pip-dependencies
- dependency-name: mypy
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: pip-dependencies
- dependency-name: mkdocs
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: pip-dependencies
- dependency-name: mkdocstrings
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: pip-dependencies
- dependency-name: mkdocs-jupyter
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: pip-dependencies
- dependency-name: mkdocs-material
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: pip-dependencies
...

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codecov bot commented Oct 21, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 90.92%. Comparing base (1ce5c67) to head (ea24812).
Report is 3 commits behind head on develop.

Additional details and impacted files
@@           Coverage Diff            @@
##           develop     #253   +/-   ##
========================================
  Coverage    90.92%   90.92%           
========================================
  Files            5        5           
  Lines          463      463           
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  Hits           421      421           
  Misses          42       42           

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@danielfromearth danielfromearth merged commit a727ed6 into develop Oct 21, 2024
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@dependabot dependabot bot deleted the dependabot/pip/develop/pip-dependencies-f703c3d586 branch October 21, 2024 18:30
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