setup.py install dependency issues

[Kappibw]

When installing PICASO 3.0 from git and using the setup.py script, the script failed for pysynphot (first for missing numpy), which I had to fetch manually.

Initial run of setup.py install, in a totally fresh conda environement (python 3.8.13) , with just git clone https://github.com/natashabatalha/picaso.git:

Reading https://pypi.org/simple/pysynphot/
Downloading https://files.pythonhosted.org/packages/53/7e/44eb1e24af0c81613cc591f31fbb614001d696ff889a032871d1c0f4d1df/pysynphot-2.0.0.tar.gz#sha256=45c29f69248ec8a641c38625d11409dd2411ea1d6faffd8c3b44da354c4d22e7
Best match: pysynphot 2.0.0
Processing pysynphot-2.0.0.tar.gz
Writing /var/folders/ft/tj4pw82n3w31kn4wlkk447n80000gn/T/easy_install-o3ewd7ts/pysynphot-2.0.0/setup.cfg
Running pysynphot-2.0.0/setup.py -q bdist_egg --dist-dir /var/folders/ft/tj4pw82n3w31kn4wlkk447n80000gn/T/easy_install-o3ewd7ts/pysynphot-2.0.0/egg-dist-tmp-v8tg9t3e
Traceback (most recent call last):
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/sandbox.py", line 156, in save_modules
    yield saved
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/sandbox.py", line 198, in setup_context
    yield
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/sandbox.py", line 259, in run_setup
    _execfile(setup_script, ns)
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/sandbox.py", line 46, in _execfile
    exec(code, globals, locals)
  File "/var/folders/ft/tj4pw82n3w31kn4wlkk447n80000gn/T/easy_install-o3ewd7ts/pysynphot-2.0.0/setup.py", line 3, in <module>
    # This sample setup.py can be used as a template for any project using d2to1.
ModuleNotFoundError: No module named 'numpy'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "setup.py", line 42, in <module>
    setup(
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/__init__.py", line 87, in setup
    return distutils.core.setup(**attrs)
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/_distutils/core.py", line 185, in setup
    return run_commands(dist)
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/_distutils/core.py", line 201, in run_commands
    dist.run_commands()
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/_distutils/dist.py", line 968, in run_commands
    self.run_command(cmd)
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/dist.py", line 1217, in run_command
    super().run_command(command)
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/_distutils/dist.py", line 987, in run_command
    cmd_obj.run()
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/command/install.py", line 74, in run
    self.do_egg_install()
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/command/install.py", line 131, in do_egg_install
    cmd.run(show_deprecation=False)
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/command/easy_install.py", line 420, in run
    self.easy_install(spec, not self.no_deps)
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/command/easy_install.py", line 662, in easy_install
    return self.install_item(None, spec, tmpdir, deps, True)
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/command/easy_install.py", line 709, in install_item
    self.process_distribution(spec, dist, deps)
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/command/easy_install.py", line 754, in process_distribution
    distros = WorkingSet([]).resolve(
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/pkg_resources/__init__.py", line 789, in resolve
    dist = best[req.key] = env.best_match(
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/pkg_resources/__init__.py", line 1075, in best_match
    return self.obtain(req, installer)
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/pkg_resources/__init__.py", line 1087, in obtain
    return installer(requirement)
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/command/easy_install.py", line 681, in easy_install
    return self.install_item(spec, dist.location, tmpdir, deps)
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/command/easy_install.py", line 707, in install_item
    dists = self.install_eggs(spec, download, tmpdir)
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/command/easy_install.py", line 900, in install_eggs
    return self.build_and_install(setup_script, setup_base)
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/command/easy_install.py", line 1174, in build_and_install
    self.run_setup(setup_script, setup_base, args)
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/command/easy_install.py", line 1158, in run_setup
    run_setup(setup_script, args)
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/sandbox.py", line 262, in run_setup
    raise
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/contextlib.py", line 131, in __exit__
    self.gen.throw(type, value, traceback)
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/sandbox.py", line 198, in setup_context
    yield
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/contextlib.py", line 131, in __exit__
    self.gen.throw(type, value, traceback)
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/sandbox.py", line 169, in save_modules
    saved_exc.resume()
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/sandbox.py", line 143, in resume
    raise exc.with_traceback(self._tb)
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/sandbox.py", line 156, in save_modules
    yield saved
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/sandbox.py", line 198, in setup_context
    yield
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/sandbox.py", line 259, in run_setup
    _execfile(setup_script, ns)
  File "/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/sandbox.py", line 46, in _execfile
    exec(code, globals, locals)
  File "/var/folders/ft/tj4pw82n3w31kn4wlkk447n80000gn/T/easy_install-o3ewd7ts/pysynphot-2.0.0/setup.py", line 3, in <module>
    # This sample setup.py can be used as a template for any project using d2to1.
ModuleNotFoundError: No module named 'numpy' 

Ran conda install numpy, then install.py setup again:

Reading https://pypi.org/simple/pysynphot/
Downloading https://files.pythonhosted.org/packages/53/7e/44eb1e24af0c81613cc591f31fbb614001d696ff889a032871d1c0f4d1df/pysynphot-2.0.0.tar.gz#sha256=45c29f69248ec8a641c38625d11409dd2411ea1d6faffd8c3b44da354c4d22e7
Best match: pysynphot 2.0.0
Processing pysynphot-2.0.0.tar.gz
Writing /var/folders/ft/tj4pw82n3w31kn4wlkk447n80000gn/T/easy_install-gb58f5o8/pysynphot-2.0.0/setup.cfg
Running pysynphot-2.0.0/setup.py -q bdist_egg --dist-dir /var/folders/ft/tj4pw82n3w31kn4wlkk447n80000gn/T/easy_install-gb58f5o8/pysynphot-2.0.0/egg-dist-tmp-qodtr664
/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
  warnings.warn(
listing git files failed - pretending there aren't any
listing git files failed - pretending there aren't any
no previously-included directories found matching 'build'
no previously-included directories found matching 'doc/build'
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.o' found anywhere in distribution
/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
  warnings.warn(
In file included from pysynphot/src/pysynphot_utils.c:2:
In file included from /Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:5:
In file included from /Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1948:
/Users/kappi/miniconda3/envs/git_picaso/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with "          "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
 ^
pysynphot/src/pysynphot_utils.c:40:27: warning: variable 'out_arr_len' is uninitialized when used here [-Wuninitialized]
  out_dim[0] = (npy_intp) out_arr_len;
                          ^~~~~~~~~~~
pysynphot/src/pysynphot_utils.c:6:24: note: initialize the variable 'out_arr_len' to silence this warning
  const int out_arr_len;
                       ^
                        = 0
2 warnings generated.
No eggs found in /var/folders/ft/tj4pw82n3w31kn4wlkk447n80000gn/T/easy_install-gb58f5o8/pysynphot-2.0.0/egg-dist-tmp-qodtr664 (setup script problem?)
error: The 'pysynphot' distribution was not found and is required by picaso

Solution : conda install -c conda-forge pysynphot