diff --git a/protein_alignment/align_filter.cwl b/protein_alignment/align_filter.cwl
index 373bb6e..7de87be 100644
--- a/protein_alignment/align_filter.cwl
+++ b/protein_alignment/align_filter.cwl
@@ -16,7 +16,7 @@ requirements:
     
 baseCommand: align_filter
 
-arguments: [ -filter, "pct_identity_gapopen_only >= 50 AND ( (query_start<=20 AND SUB(query_length, query_end)<=20) OR pct_identity_gapopen_only >= 60 ) AND (SUB(subject_end, subject_start) > 90 || SUB(subject_end, subject_start) > MUL(query_length,1.5) || num_ident >=60) AND (query_length > 30 || (pct_identity_gapopen_only >= 80 AND SUB(subject_end, subject_start) >= MUL(query_length,2.4)))",  -ifmt, seq-align, -nogenbank ]
+arguments: [ -filter, "pct_identity_gapopen_only >= 50 AND ( (query_start<=20 AND SUB(query_length, query_end)<=20) OR pct_identity_gapopen_only >= 60 ) AND (SUB(subject_end, subject_start) > 90 || SUB(subject_end, subject_start) > MUL(query_length,1.5) || num_ident >=60) AND (query_length > 30 || (pct_identity_gap >= 80 AND SUB(subject_end, subject_start) >= MUL(query_length,2.4)))",  -ifmt, seq-align, -nogenbank ]
 
 inputs:
   asn_cache: