Changelog

[Unreleased]

[ 2.2.1 ] - 2023-08-04

Fixed

Interleaved (collated) paired-end files were incompletely processed (pairs were recognized but not masked / removed).

[ 2.2.0 ] - 2023-07-18

Added

New option (-s) for declaring interleaved (collated) paired-end file input. In this mode when a read is identified as human the pair mate will also be masked whether or not it too is identified as human. Without this flag an interleaved (collated) paired-end input file will only have identified reads masked.
New option (-u) for user-defined removed-spots file (in combination with -r).

[ 2.1.0 ] - 2023-05-10

Changed

Added an md5 check with download of database
init_db.sh will also check for and install updated database (with md5 check).
Test output includes the database version if available and not a custom installation.

[ 2.0.0 ] - 2022-08-31

Changed

Make masking read sequence to 'N' default (!)

Removed

-n option removed (now default).

Added

New option (-x) to remove read sequence instead of masking.
New option to set number of threads (-p).

[ 1.1.0 ] - 2021-11-10

Changed

Added useful options and fixed path (thank you k-florek).

[ 1.0.0 ] - 2021-05-05

Added, first GitHub release.