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ndierckx committed May 29, 2019
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NOVOPlasty is a de novo assembler and heteroplasmy/variance caller for short circular genomes.

**Last updates: 24/04/19 version 3.0**
**Last updates: 24/04/19 version 3.2**
- Resolved several bugs
**24/04/19**
- UPDATED CONFIG FILE!
- New heteroplasmy function (can link heteroplasmic mutations by local assembly)
- New batch function
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No further installation is necessary:

<code>perl NOVOPlasty3.0.pl -c config.txt</code>
<code>perl NOVOPlasty3.2.pl -c config.txt</code>

The input reads have to be uncompressed Illumina reads (fastq/fasta files) or gz/bz2 zipped files.
There is also an Ion Torrent option, but it does not produce the best results.
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