NOVOPlasty3.0

• UPDATED CONFIG FILE!
• New heteroplasmy function (can link heteroplasmic mutations by local assembly)
• New batch function
• Small improvements in assembly

NOVOPlasty2.7.2

• A bug in the variance caller is resolved
• Added new read ids

NOVOPlasty2.7.1

• There was a bug since version 2.2.3 that made seed files, where the bases weren't in CAPs (actg in stead of ACTG), unreadable and outputted INVALID SEED ERROR.
• A new option was added to the config file (Use Quality Scores), Use this option for the 300 bp Illumina reads (as long as their high error rates aren't fixed) UPDATE CONFIG FILE!

NOVOPlasty2.7.0

• Version 2.6.8 and 2.6.9 had a bug that read the discriptions of the config file in stead of your input

NOVOPlasty2.6.8

• Forgot to delete a line of code that prevented to use more than 15 GB of RAM, use version 2.6.8. or higher!
• Problems with incorrect reading of the config file (especially with Windows) should be resolved
• UPDATED CONFIG FILE!

NOVOPlasty2.6.6

• Automatic insert size was inaccurate for version 2.6.4 (fixed)
• Resolved some bugs and small improvements.
• Improved Heteroplamsy calling

NOVOPlasty2.6.5

• Automatic insert size was inaccurate for version 2.6.4 (fixed)
• Resolved some bugs and small improvements.
• Improved Heteroplasmy calling

NOVOPlasty2.6.4

• There are two new options, a basic variance and heteroplasmy caller
• Improved reference guidance
• Resolved some bugs and small improvements.

NOVOPlasty2.6.3

-Use config file of version 2.6.2, incorrect in the release!!!!

• Improved Seed retrieval.
• Indicates when the coverage is too low (it gave a seed error before).
• Resolved some bugs and small improvements.

NOVOPlasty2.6.2

• Resolved bugs in the merging of contigs.