This repository contains methods for analyzing and quantifying neuroanatomy in X-ray microtomography images. You can find further details about how we apply the methods in this repo to analyze mm-scale brain volumes in the following paper:
Dyer, Eva L., et al. "Quantifying mesoscale neuroanatomy using X-ray microtomography." eNeuro, eneuro.org/content/4/5/ENEURO.0195-17.2017 (2017).
If you use any of the code or datasets in this repo, please cite this paper. Please direct any questions to Eva Dyer at evadyer{at}gatech{dot}edu.
- Demo: Reproducible Docker image containing an ipython notebook that walks through an example on how to use XBRAIN