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_toc.yml
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format: jb-book
root: intro
parts:
- caption: About This Course
chapters:
- file: 1-intro/why
- file: 1-intro/learning_objectives
- file: syllabus
- file: 1-intro/learning_approach
sections:
- file: 1-intro/actually_write_code
- file: 1-intro/mindset
- file: 1-intro/flipped_classroom
- file: 1-intro/errors_debugging
- file: 1-intro/ai
- file: 1-intro/teamwork
- file: 1-intro/pedagogy
sections:
- file: 1-intro/teaching_approach
- file: 1-intro/authenticity
- file: 1-intro/21st_cen_skills
- file: 1-intro/constructivism
- file: 1-intro/connectivism
- file: 1-intro/open
sections:
- file: 1-intro/software
- file: 1-intro/free_licenses
- file: 1-intro/open_science
- file: 1-intro/peer_review
- file: 1-intro/for_profit
- file: 1-intro/impact_factors
- file: 1-intro/novelty
- file: 1-intro/open_publishing
- file: 1-intro/preregistration
- file: 1-intro/open_methods
- file: 1-intro/oer
- file: 1-intro/oer_this_course
- file: 1-intro/licenses
- caption: Introduction to Data Science
chapters:
- file: 2-nds/introduction
- file: 2-nds/learning_objectives
- file: 2-nds/what_is_nds
sections:
- file: 2-nds/data
- file: 2-nds/where
- file: 2-nds/data_science
- file: 2-nds/data_cleaning
- file: 2-nds/tools_for_nds
sections:
- file: 2-nds/spreadsheets
- file: 2-nds/spreadsheets_limits
- file: 2-nds/reproducibility
- file: 2-nds/sci_prog_lang
- file: 2-nds/which_lang
- file: 2-nds/libs
- file: 2-nds/why_python
- file: 2-nds/coding
sections:
- file: 2-nds/python
- file: 2-nds/terminal
- file: 2-nds/jupyter
- file: 2-nds/markdown
- file: 2-nds/vscode
- file: 2-nds/github
- caption: Set Up Your Computer for Data Science
chapters:
- file: 2b-setup/introduction
- file: 2b-setup/learning_objectives
- file: 2b-setup/install_tools
sections:
- file: 2b-setup/github
- file: 2b-setup/anaconda
- file: 2b-setup/vscode
- file: 2b-setup/github_classroom
- file: 2b-setup/first_repo
sections:
- file: 2b-setup/github_repo
- file: 2b-setup/repo_in_vscode
- file: 2b-setup/edit_commit_push
- file: 2b-setup/edit_readme
- file: 2b-setup/new_markdown_file
- file: 2b-setup/getting_help
- file: 2b-setup/submitting_assignments
- caption: Introducing Python
chapters:
- file: 3-python/introduction
- file: 3-python/learning_objectives
- file: 3-python/preliminaries
sections:
- file: 3-python/jupyter_vscode
- file: 3-python/getting_help
- file: 3-python/data_types
sections:
- file: 3-python/variables_assignment
- file: 3-python/types_conversion
- file: 3-python/builtin
- file: 3-python/lists
- file: 3-python/dictionaries
- file: 3-python/flow_control
sections:
- file: 3-python/for_loops
- file: 3-python/conditionals
- file: 3-python/working_w_data
sections:
- file: 3-python/pandas_dataframes
- file: 3-python/looping_data_files
- caption: AI-Assisted Coding
chapters:
- file: 3b-ai_assisted/introduction
- file: 3b-ai_assisted/ai_assisted
- file: 3b-ai_assisted/rt_data
- file: 3b-ai_assisted/pandas_copilot
- file: 3b-ai_assisted/multi_data_files
sections:
- file: 3b-ai_assisted/multi_data_files_1
- file: 3b-ai_assisted/multi_data_files_2
- file: 3b-ai_assisted/multi_data_files_3
- caption: Visualizing Data
chapters:
- file: 4-viz/introduction
- file: 4-viz/learning_objectives
- file: 4-viz/plotting
- file: 4-viz/proc_vs_oo
- file: 4-viz/subplots
- file: 4-viz/plotting_types
- file: 4-viz/seaborn
- file: 4-viz/human_factors
- caption: Exploratory Data Analysis
chapters:
- file: 5-eda/introduction
- file: 5-eda/learning_objectives
- file: 5-eda/repeated_measures
- file: 5-eda/data_cleaning
- file: 5-eda/ttests
- caption: Single Unit Data
chapters:
- file: 6-single_unit/introduction
- file: 6-single_unit/learning_objectives
- file: 6-single_unit/single_unit_intro
sections:
- file: 6-single_unit/intro_spike_trains
- file: 6-single_unit/ten_intensities
- file: 6-single_unit/heat_maps
- file: 6-single_unit/intro_multielec_data
sections:
- file: 6-single_unit/pandas_multielec
- file: 6-single_unit/corr_spike_trains
- caption: EEG Data
chapters:
- file: 7-eeg/introduction
- file: 7-eeg/learning_objectives
- file: 7-eeg/about_eeg
- file: 7-eeg/approaches
sections:
- file: 7-eeg/time_freq
- file: 7-eeg/erps
- file: 7-eeg/components
- file: 7-eeg/mne_python
sections:
- file: 7-eeg/mne_data_1
- file: 7-eeg/mne_data_2
- file: 7-eeg/erp_preprocessing
sections:
- file: 7-eeg/erp_filtering
- file: 7-eeg/erp_artifacts
- file: 7-eeg/erp_segmentation
- file: 7-eeg/erp_avg_reref
- file: 7-eeg/erp_group
sections:
- file: 7-eeg/erp_group_viz
- file: 7-eeg/erp_group_stats
- caption: MRI Data
chapters:
- file: 8-mri/introduction
- file: 8-mri/learning_objectives
- file: 8-mri/read_viz
- file: 8-mri/nifti
- caption: Machine Learning
chapters:
- file: 9-machine_learning/introduction
- caption: References
chapters:
- file: zrefs