Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Create a way of accessing SNOMED-CT assessments #209

Closed
3 tasks done
surchs opened this issue Dec 13, 2024 · 3 comments · Fixed by neurobagel/annotation_tool#836
Closed
3 tasks done

Create a way of accessing SNOMED-CT assessments #209

surchs opened this issue Dec 13, 2024 · 3 comments · Fixed by neurobagel/annotation_tool#836
Assignees

Comments

@surchs
Copy link
Contributor

surchs commented Dec 13, 2024

We want a source of all IDs and labels of clinical or cognitive assessments from SNOMED-CT so we can use them as our annotation and validation targets.

Options are:

TODO

  • generate a .json file with the assessments
  • put the code either in dev-docs or a repo
  • document if we have any hierarchy in these terms
@surchs surchs added the flag:schedule Flag issue that should go on the roadmap or backlog. label Dec 13, 2024
@surchs surchs moved this to Backlog in Neurobagel Dec 16, 2024
@surchs surchs removed the status in Neurobagel Dec 16, 2024
@rmanaem rmanaem moved this to Backlog in Neurobagel Dec 16, 2024
@rmanaem rmanaem removed the flag:schedule Flag issue that should go on the roadmap or backlog. label Dec 16, 2024
@surchs surchs moved this from Backlog to Specify - Active in Neurobagel Dec 17, 2024
@surchs surchs moved this from Specify - Active to Specify - Done in Neurobagel Dec 17, 2024
@surchs surchs self-assigned this Dec 17, 2024
@surchs surchs moved this from Specify - Done to Implement - Active in Neurobagel Dec 17, 2024
@surchs
Copy link
Contributor Author

surchs commented Dec 17, 2024

looking at code from #52

@surchs
Copy link
Contributor Author

surchs commented Dec 17, 2024

Athena Concept ID of "Assessment scales (assessment scale)" is 4157120 from SNOMED

@surchs
Copy link
Contributor Author

surchs commented Dec 17, 2024

And the terms are unfortunately flat in SNOMED. Also not that many (~2500)

@surchs surchs moved this from Implement - Active to Implement - Done in Neurobagel Dec 18, 2024
@rmanaem rmanaem moved this from Implement - Done to Review - Active in Neurobagel Dec 18, 2024
@github-project-automation github-project-automation bot moved this from Review - Active to Review - Done in Neurobagel Dec 18, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
Status: Review - Done
Development

Successfully merging a pull request may close this issue.

2 participants