From e905544e0e41f0db1df921c1b0de248297070c57 Mon Sep 17 00:00:00 2001 From: fiorini9 <110110777+fiorini9@users.noreply.github.com> Date: Wed, 13 Sep 2023 16:53:46 -0400 Subject: [PATCH] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 49ccee8..dd32ac0 100644 --- a/README.md +++ b/README.md @@ -85,7 +85,7 @@ devtools::install_github("neurobioinfo/scrnabox/scrnaboxR") ``` `'scrnaboxR'` provides a collection of functions for conducting enrichment analysis and other analyses associated with scRNAseq data. It serves as a companion to scRNAbox, offering a range of tools and functionalities to enhance scRNAseq data analysis. -Please note that all R packages must be loaded into a common R library. For further instructions regarding the preparation of an R library please visit scRNAbox's [documentation](https://neurobioinfo.github.io/scrnabox/site/). Users must then define the location of their R library (`R_LIB_PATH=`), their version of R (`R_VERSION`), and the location of CellRanger (`MODULECELLRANGER`) in the `scrnabox_config.ini` file which is deposited into the working directory upon running the pipeline initation step: +Please note that all R packages must be loaded into a common R library. For further instructions regarding the preparation of an R library please visit scRNAbox's [documentation](https://neurobioinfo.github.io/scrnabox/site/). Users must then define the location of their R library (`R_LIB_PATH=`), their version of R (`R_VERSION=`), and the location of CellRanger (`MODULECELLRANGER=`) in the `scrnabox_config.ini` file which is deposited into the working directory upon running the pipeline initation Step: ``` bash ./scrnabox.slurm/launch_scrnabox.sh \ -d ./working_directory \