From 4c643d5ea1ec955d9bde6c2daa460a5c8eab31e4 Mon Sep 17 00:00:00 2001 From: bschilder Date: Thu, 21 Dec 2023 16:26:40 -0500 Subject: [PATCH] update readme badges [skip ci] --- README.md | 125 ++++++++++++++++++++++++------------------------------ 1 file changed, 55 insertions(+), 70 deletions(-) diff --git a/README.md b/README.md index a387d9b..c246869 100644 --- a/README.md +++ b/README.md @@ -1,14 +1,14 @@ `orthogene`: Interspecies gene mapping ================
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[![R build @@ -20,7 +20,7 @@ status](https://github.com/neurogenomics/orthogene/workflows/rworkflows/badge.sv Authors: Brian Schilder

-README updated: Aug-30-2023 +README updated: Dec-21-2023

# Intro @@ -249,83 +249,68 @@ for the full vignette. utils::sessionInfo() ``` - ## R version 4.2.1 (2022-06-23) - ## Platform: x86_64-apple-darwin17.0 (64-bit) - ## Running under: macOS Big Sur ... 10.16 + ## R version 4.3.1 (2023-06-16) + ## Platform: aarch64-apple-darwin20 (64-bit) + ## Running under: macOS Sonoma 14.2 ## ## Matrix products: default - ## BLAS: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRblas.0.dylib - ## LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib + ## BLAS: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRblas.0.dylib + ## LAPACK: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.11.0 ## ## locale: ## [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 ## + ## time zone: America/New_York + ## tzcode source: internal + ## ## attached base packages: ## [1] stats graphics grDevices utils datasets methods base ## ## other attached packages: - ## [1] orthogene_1.7.1 + ## [1] orthogene_1.8.0 ## ## loaded via a namespace (and not attached): - ## [1] nlme_3.1-162 bitops_1.0-7 - ## [3] ggtree_3.6.2 bit64_4.0.5 - ## [5] filelock_1.0.2 RColorBrewer_1.1-3 - ## [7] BiocPkgTools_1.16.1 httr_1.4.6 - ## [9] rprojroot_2.0.3 gh_1.4.0 - ## [11] tools_4.2.1 backports_1.4.1 - ## [13] utf8_1.2.3 R6_2.5.1 - ## [15] DT_0.28 lazyeval_0.2.2 - ## [17] DBI_1.1.3 BiocGenerics_0.44.0 - ## [19] colorspace_2.1-0 withr_2.5.0 - ## [21] tidyselect_1.2.0 bit_4.0.5 - ## [23] curl_5.0.0 compiler_4.2.1 - ## [25] graph_1.76.0 cli_3.6.1 - ## [27] rvest_1.0.3 Biobase_2.58.0 - ## [29] xml2_1.3.4 plotly_4.10.2 - ## [31] desc_1.4.2 scales_1.2.1 - ## [33] readr_2.1.4 RBGL_1.74.0 - ## [35] rappdirs_0.3.3 stringr_1.5.0 - ## [37] digest_0.6.31 yulab.utils_0.0.6 - ## [39] rmarkdown_2.22 rorcid_0.7.0 - ## [41] pkgconfig_2.0.3 htmltools_0.5.5 - ## [43] dbplyr_2.3.2 fastmap_1.1.1 - ## [45] htmlwidgets_1.6.2 rlang_1.1.1 - ## [47] rstudioapi_0.14 httpcode_0.3.0 - ## [49] RSQLite_2.3.1 badger_0.2.3 - ## [51] gridGraphics_0.5-1 generics_0.1.3 - ## [53] jsonlite_1.8.4 dplyr_1.1.2 - ## [55] car_3.1-2 RCurl_1.98-1.12 - ## [57] homologene_1.4.68.19.3.27 magrittr_2.0.3 - ## [59] ggplotify_0.1.0 patchwork_1.1.2 - ## [61] fauxpas_0.5.2 Matrix_1.5-4.1 - ## [63] Rcpp_1.0.10 munsell_0.5.0 - ## [65] fansi_1.0.4 ape_5.7-1 - ## [67] abind_1.4-5 babelgene_22.9 - ## [69] lifecycle_1.0.3 stringi_1.7.12 - ## [71] whisker_0.4.1 yaml_2.3.7 - ## [73] carData_3.0-5 biocViews_1.66.3 - ## [75] BiocFileCache_2.6.1 grid_4.2.1 - ## [77] blob_1.2.4 parallel_4.2.1 - ## [79] lattice_0.21-8 hms_1.1.3 - ## [81] knitr_1.43 pillar_1.9.0 - ## [83] igraph_1.5.0.1 ggpubr_0.6.0 - ## [85] RUnit_0.4.32 ggsignif_0.6.4 - ## [87] rworkflows_0.99.12 stats4_4.2.1 - ## [89] gprofiler2_0.2.1 crul_1.4.0 - ## [91] XML_3.99-0.14 glue_1.6.2 - ## [93] evaluate_0.21 ggfun_0.0.9 - ## [95] data.table_1.14.8 renv_0.17.3 - ## [97] BiocManager_1.30.20 treeio_1.23.1 - ## [99] vctrs_0.6.2 tzdb_0.4.0 - ## [101] grr_0.9.5 gtable_0.3.3 - ## [103] purrr_1.0.1 tidyr_1.3.0 - ## [105] cachem_1.0.8 ggplot2_3.4.2 - ## [107] xfun_0.39 broom_1.0.4 - ## [109] tidytree_0.4.2 rstatix_0.7.2 - ## [111] viridisLite_0.4.2 dlstats_0.1.7 - ## [113] tibble_3.2.1 aplot_0.1.10 - ## [115] rvcheck_0.2.1 memoise_2.0.1 - ## [117] here_1.0.1 + ## [1] gtable_0.3.4 babelgene_22.9 + ## [3] xfun_0.41 ggplot2_3.4.4 + ## [5] htmlwidgets_1.6.4 rstatix_0.7.2 + ## [7] lattice_0.22-5 vctrs_0.6.5 + ## [9] tools_4.3.1 generics_0.1.3 + ## [11] yulab.utils_0.1.1 parallel_4.3.1 + ## [13] tibble_3.2.1 fansi_1.0.6 + ## [15] pkgconfig_2.0.3 Matrix_1.6-4 + ## [17] ggplotify_0.1.2 data.table_1.14.10 + ## [19] homologene_1.4.68.19.3.27 RColorBrewer_1.1-3 + ## [21] desc_1.4.3 lifecycle_1.0.4 + ## [23] compiler_4.3.1 treeio_1.26.0 + ## [25] dlstats_0.1.7 munsell_0.5.0 + ## [27] carData_3.0-5 ggtree_3.10.0 + ## [29] gprofiler2_0.2.2 ggfun_0.1.3 + ## [31] htmltools_0.5.7 yaml_2.3.8 + ## [33] lazyeval_0.2.2 plotly_4.10.3 + ## [35] pillar_1.9.0 car_3.1-2 + ## [37] ggpubr_0.6.0 tidyr_1.3.0 + ## [39] cachem_1.0.8 grr_0.9.5 + ## [41] abind_1.4-5 nlme_3.1-164 + ## [43] tidyselect_1.2.0 aplot_0.2.2 + ## [45] digest_0.6.33 dplyr_1.1.4 + ## [47] purrr_1.0.2 rprojroot_2.0.4 + ## [49] fastmap_1.1.1 grid_4.3.1 + ## [51] here_1.0.1 colorspace_2.1-0 + ## [53] cli_3.6.2 magrittr_2.0.3 + ## [55] patchwork_1.1.3 utf8_1.2.4 + ## [57] broom_1.0.5 ape_5.7-1 + ## [59] withr_2.5.2 scales_1.3.0 + ## [61] backports_1.4.1 httr_1.4.7 + ## [63] rmarkdown_2.25 rvcheck_0.2.1 + ## [65] ggsignif_0.6.4 memoise_2.0.1.9000 + ## [67] evaluate_0.23 knitr_1.45 + ## [69] rworkflows_1.0.1 viridisLite_0.4.2 + ## [71] gridGraphics_0.5-1 rlang_1.1.2 + ## [73] Rcpp_1.0.11 glue_1.6.2 + ## [75] tidytree_0.4.6 BiocManager_1.30.22 + ## [77] renv_1.0.3 rstudioapi_0.15.0 + ## [79] jsonlite_1.8.8 R6_2.5.1 + ## [81] badger_0.2.3 fs_1.6.3