From c57a55abab9696794be1d5359c630acaf3e31871 Mon Sep 17 00:00:00 2001 From: bschilder Date: Wed, 30 Aug 2023 18:11:36 +0100 Subject: [PATCH] Bump to 1.7.2 and push to bioc --- DESCRIPTION | 2 +- NEWS.md | 6 ++++++ R/rotate_clades.R | 4 ++-- README.md | 14 +++++++------- 4 files changed, 16 insertions(+), 10 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 43eaa16..aefe8bb 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: orthogene Type: Package Title: Interspecies gene mapping -Version: 1.7.1 +Version: 1.7.2 Authors@R: c( person(given = "Brian", diff --git a/NEWS.md b/NEWS.md index 3b5dd36..58f1ca2 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,9 @@ +# orthogene 1.7.2 + +## Bug fixes + +* + # orthogene 1.7.1 ## New features diff --git a/R/rotate_clades.R b/R/rotate_clades.R index aaa7fa2..c80f091 100644 --- a/R/rotate_clades.R +++ b/R/rotate_clades.R @@ -1,9 +1,9 @@ rotate_clades <- function(tr, clades){ - + # clades <- list(c("homo sapiens","pan troglodytes")) requireNamespace("ape") requireNamespace("phytools") - # clades <- list(c("homo sapiens","pan troglodytes")) + for(tips in clades){ tips <- tips[tips %in% tr$tip.label] if(length(tips)>1){ diff --git a/README.md b/README.md index 9e20e87..a387d9b 100644 --- a/README.md +++ b/README.md @@ -2,25 +2,25 @@ ================
[![](https://img.shields.io/badge/release%20version-1.4.2-green.svg)](https://www.bioconductor.org/packages/orthogene) -[![](https://img.shields.io/badge/download-222/month-green.svg)](https://bioconductor.org/packages/stats/bioc/orthogene) -[![](https://img.shields.io/badge/download-3320/total-green.svg)](https://bioconductor.org/packages/stats/bioc/orthogene) +[![](https://img.shields.io/badge/download-304/month-green.svg)](https://bioconductor.org/packages/stats/bioc/orthogene) +[![](https://img.shields.io/badge/download-3771/total-green.svg)](https://bioconductor.org/packages/stats/bioc/orthogene) [![download](http://www.bioconductor.org/shields/downloads/release/orthogene.svg)](https://bioconductor.org/packages/stats/bioc/orthogene) [![License: GPL-3](https://img.shields.io/badge/license-GPL--3-blue.svg)](https://cran.r-project.org/web/licenses/GPL-3)
-[![](https://img.shields.io/badge/devel%20version-1.7.1-black.svg)](https://github.com/neurogenomics/orthogene) +[![](https://img.shields.io/badge/devel%20version-1.7.2-black.svg)](https://github.com/neurogenomics/orthogene) [![](https://img.shields.io/github/languages/code-size/neurogenomics/orthogene.svg)](https://github.com/neurogenomics/orthogene) [![](https://img.shields.io/github/last-commit/neurogenomics/orthogene.svg)](https://github.com/neurogenomics/orthogene/commits/main)
[![R build status](https://github.com/neurogenomics/orthogene/workflows/rworkflows/badge.svg)](https://github.com/neurogenomics/orthogene/actions) -[![](https://codecov.io/gh/neurogenomics/orthogene/branch/main/graph/badge.svg)](https://codecov.io/gh/neurogenomics/orthogene) +[![](https://codecov.io/gh/neurogenomics/orthogene/branch/main/graph/badge.svg)](https://app.codecov.io/gh/neurogenomics/orthogene)

Authors: Brian Schilder

-README updated: Jul-14-2023 +README updated: Aug-30-2023

# Intro @@ -308,9 +308,9 @@ utils::sessionInfo() ## [77] blob_1.2.4 parallel_4.2.1 ## [79] lattice_0.21-8 hms_1.1.3 ## [81] knitr_1.43 pillar_1.9.0 - ## [83] igraph_1.4.3 ggpubr_0.6.0 + ## [83] igraph_1.5.0.1 ggpubr_0.6.0 ## [85] RUnit_0.4.32 ggsignif_0.6.4 - ## [87] rworkflows_0.99.9 stats4_4.2.1 + ## [87] rworkflows_0.99.12 stats4_4.2.1 ## [89] gprofiler2_0.2.1 crul_1.4.0 ## [91] XML_3.99-0.14 glue_1.6.2 ## [93] evaluate_0.21 ggfun_0.0.9