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Reference Dataset for Testing and Training on Anatomical Variations #74

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yw7 opened this issue Oct 9, 2024 · 0 comments
Open

Reference Dataset for Testing and Training on Anatomical Variations #74

yw7 opened this issue Oct 9, 2024 · 0 comments

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@yw7
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yw7 commented Oct 9, 2024

We should consider using the dataset referenced in the following paper for testing and training to better account for anatomical variations in CT images:

https://doi.org/10.1038/s41597-021-01060-0

OSF Reporsitories:
VerSe'19: https://osf.io/nqjyw/
VerSe'20: https://osf.io/t98fz/

Some examples using this dataset on #75:

11 Thoracic Vertebrae ✅ 4 Lumbar Vertebrae✅ 6 Lumbar Vertebrae❌ 6 Lumbar Vertebrae✅
sub-verse636_ct_11t_sag_0 5_step2_output_tags sub-verse627_ct_4l_sag_0 5_step2_output_tags sub-verse623_ct_6l_sag_0 5_step2_output_tags sub-verse585_ct_6l_sag_0 5_step2_output_tags

Note: The current main branch is also support 4 and 6 lumbar vertebrae when full field of view is provided:

4 Lumbar Vertebrae✅ 6 Lumbar Vertebrae✅
whole_amuPAM50016_T1w_sag_0 5_step2_output_tags sub-verse585_ct_6l_sag_0 5_step2_output_tags (1)
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